Variant report

Variant	rs72877455
Chromosome Location	chr3:59518492-59518493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17060878	0.94[ASN][1000 genomes]
rs17060879	0.94[ASN][1000 genomes]
rs17060883	0.85[ASN][1000 genomes]
rs35500604	0.83[ASN][1000 genomes]
rs41502947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58468498	0.94[ASN][1000 genomes]
rs60650957	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877416	0.94[ASN][1000 genomes]
rs72877418	0.94[ASN][1000 genomes]
rs72877421	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877424	0.85[ASN][1000 genomes]
rs72877427	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877429	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877430	0.94[ASN][1000 genomes]
rs72877432	0.94[ASN][1000 genomes]
rs72877433	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877434	0.94[ASN][1000 genomes]
rs72877437	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877442	0.94[ASN][1000 genomes]
rs72877443	0.94[ASN][1000 genomes]
rs72877445	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877446	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877447	0.94[ASN][1000 genomes]
rs72877448	0.94[ASN][1000 genomes]
rs72877450	0.85[ASN][1000 genomes]
rs72877453	0.89[ASN][1000 genomes]
rs72877456	0.94[ASN][1000 genomes]
rs72877460	0.94[ASN][1000 genomes]
rs7356070	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638203	0.94[ASN][1000 genomes]
rs7646357	0.94[ASN][1000 genomes]
rs9311713	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832635	0.94[ASN][1000 genomes]
rs9840238	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848047	0.91[ASN][1000 genomes]
rs9865729	0.94[ASN][1000 genomes]
rs9869699	0.94[ASN][1000 genomes]
rs9870039	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59508200-59526200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:59517600-59520800	Weak transcription	Osteobl	bone
3	chr3:59517600-59521800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:59517600-59524800	Weak transcription	Brain Germinal Matrix	brain
5	chr3:59517800-59521200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:59518000-59518600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:59518000-59521800	Weak transcription	Pancreas	Pancrea
8	chr3:59518000-59530800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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