Variant report

Variant	rs61553785
Chromosome Location	chr15:41870246-41870247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41861308..41862926-chr15:41869698..41872291,2	K562	blood:

Variant related genes	Relation type
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57922070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60774614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407244	1.00[AMR][1000 genomes]
rs73409149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3312194	chr15:41868660-41873158	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3312195	chr15:41868660-41873158	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41852600-41877400	Weak transcription	HMEC	breast
4	chr15:41852800-41877400	Weak transcription	NHEK	skin
5	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
6	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
7	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
9	chr15:41855400-41877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:41855400-41877200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:41860800-41871800	Strong transcription	Brain Germinal Matrix	brain
12	chr15:41861000-41877200	Weak transcription	HUVEC	blood vessel
13	chr15:41861200-41871200	Weak transcription	Small Intestine	intestine
14	chr15:41861200-41877000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:41861400-41870400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:41861400-41870400	Strong transcription	Fetal Stomach	stomach
17	chr15:41861400-41870600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr15:41861400-41870600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr15:41861400-41870800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:41861400-41871000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:41861400-41871400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:41861400-41871400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:41861400-41873200	Weak transcription	K562	blood
24	chr15:41861600-41871400	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr15:41861600-41871400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:41861800-41871000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:41861800-41871000	Strong transcription	Fetal Intestine Large	intestine
28	chr15:41862000-41870400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:41862000-41870600	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr15:41862000-41870800	Strong transcription	Fetal Intestine Small	intestine
31	chr15:41862000-41871200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:41862200-41870800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:41862400-41870600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:41863000-41871400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:41863200-41871200	Strong transcription	Fetal Brain Female	brain
36	chr15:41863800-41873000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:41864200-41877000	Weak transcription	Fetal Kidney	kidney
38	chr15:41865800-41877000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:41865800-41877000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:41865800-41877200	Weak transcription	NHLF	lung
41	chr15:41866800-41870800	Weak transcription	Fetal Lung	lung
42	chr15:41867600-41877200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:41867600-41877200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr15:41867800-41870400	Weak transcription	Lung	lung
45	chr15:41867800-41870600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:41867800-41870600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr15:41867800-41870600	Weak transcription	Gastric	stomach
48	chr15:41867800-41870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:41867800-41871000	Weak transcription	Left Ventricle	heart
50	chr15:41867800-41871800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links