Variant report

Variant	rs73407244
Chromosome Location	chr15:42021309-42021310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42019750..42022278-chr15:42036338..42038977,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56840481	1.00[EUR][1000 genomes]
rs57177941	1.00[AMR][1000 genomes]
rs57922070	1.00[AMR][1000 genomes]
rs59516338	1.00[AMR][1000 genomes]
rs60534710	1.00[AMR][1000 genomes]
rs60774614	1.00[AMR][1000 genomes]
rs61553785	1.00[AMR][1000 genomes]
rs7170898	1.00[EUR][1000 genomes]
rs73391112	1.00[AMR][1000 genomes]
rs73391113	1.00[AMR][1000 genomes]
rs73391126	1.00[AMR][1000 genomes]
rs73391132	1.00[AMR][1000 genomes]
rs73391133	1.00[AMR][1000 genomes]
rs73391143	1.00[AMR][1000 genomes]
rs73403182	1.00[AMR][1000 genomes]
rs73407154	1.00[EUR][1000 genomes]
rs73409128	1.00[EUR][1000 genomes]
rs73409149	1.00[AMR][1000 genomes]
rs73410612	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1041861	chr15:42016097-42062287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	esv988006	chr15:42016301-42026157	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41984200-42034800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41989000-42041600	Weak transcription	Fetal Brain Male	brain
4	chr15:41995400-42023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:41996200-42034800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:42002000-42021400	Weak transcription	Esophagus	oesophagus
7	chr15:42002200-42028400	Weak transcription	Pancreas	Pancrea
8	chr15:42003600-42021800	Weak transcription	Lung	lung
9	chr15:42003600-42026800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:42003600-42027000	Weak transcription	Brain Germinal Matrix	brain
11	chr15:42003600-42028400	Weak transcription	Aorta	Aorta
12	chr15:42003800-42021400	Weak transcription	Fetal Kidney	kidney
13	chr15:42003800-42027200	Weak transcription	Spleen	Spleen
14	chr15:42003800-42028400	Weak transcription	Gastric	stomach
15	chr15:42003800-42028400	Weak transcription	Small Intestine	intestine
16	chr15:42003800-42056000	Weak transcription	Colonic Mucosa	Colon
17	chr15:42004000-42021400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:42004000-42026800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:42004000-42027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:42004200-42021400	Weak transcription	Left Ventricle	heart
21	chr15:42004600-42026600	Weak transcription	Right Ventricle	heart
22	chr15:42004800-42021400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:42005400-42027000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:42005400-42028400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:42005600-42027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:42005600-42027400	Weak transcription	NHDF-Ad	bronchial
27	chr15:42005800-42022600	Weak transcription	Brain Angular Gyrus	brain
28	chr15:42005800-42027000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr15:42005800-42028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:42006000-42021400	Weak transcription	Brain Anterior Caudate	brain
31	chr15:42006000-42022600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:42006000-42026200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:42006000-42028400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:42006200-42021400	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:42006200-42021400	Weak transcription	Ovary	ovary
36	chr15:42006200-42021400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:42006200-42022600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:42006200-42022800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:42006200-42024000	Weak transcription	Fetal Brain Female	brain
40	chr15:42006200-42025000	Weak transcription	HepG2	liver
41	chr15:42006200-42026600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:42006200-42027200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:42006200-42027200	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:42006200-42034800	Weak transcription	A549	lung
45	chr15:42006400-42025600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:42006400-42026600	Weak transcription	HMEC	breast
47	chr15:42006400-42041400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:42006600-42021400	Weak transcription	Adipose Nuclei	Adipose
49	chr15:42006600-42022600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:42006600-42025600	Weak transcription	Dnd41	blood

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