Variant report

Variant	rs73391126
Chromosome Location	chr15:41858132-41858133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFATC1	chr15:41857830-41858204	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41856836..41858542-chr15:41952173..41953837,2	K562	blood:
2	chr15:41853373..41858542-chr15:41950830..41955637,10	K562	blood:
3	chr15:41849860..41852803-chr15:41858013..41860929,2	MCF-7	breast:
4	chr15:41853319..41856101-chr15:41857506..41859513,2	MCF-7	breast:

Variant related genes	Relation type
TYRO3	TF binding region
ENSG00000092445	Chromatin interaction
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56840481	1.00[AFR][1000 genomes]
rs57922070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60774614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407154	1.00[AFR][1000 genomes]
rs73407244	1.00[AMR][1000 genomes]
rs73409149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41859600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41852400-41860600	Weak transcription	HUVEC	blood vessel
4	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:41852600-41858600	Weak transcription	NHDF-Ad	bronchial
6	chr15:41852600-41859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:41852600-41877400	Weak transcription	HMEC	breast
8	chr15:41852800-41877400	Weak transcription	NHEK	skin
9	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
10	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
11	chr15:41853200-41858200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:41853200-41860200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
16	chr15:41853400-41859400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:41853400-41859800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
19	chr15:41853600-41859800	Genic enhancers	H1 Cell Line	embryonic stem cell
20	chr15:41853600-41860000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:41853800-41861400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
24	chr15:41854000-41860200	Strong transcription	Dnd41	blood
25	chr15:41854000-41860800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:41854200-41859600	Weak transcription	Pancreas	Pancrea
28	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
29	chr15:41855000-41858200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:41855000-41861400	Genic enhancers	Brain Anterior Caudate	brain
31	chr15:41855200-41860000	Weak transcription	Gastric	stomach
32	chr15:41855400-41860200	Weak transcription	Esophagus	oesophagus
33	chr15:41855400-41862000	Weak transcription	NHLF	lung
34	chr15:41855400-41863400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:41855400-41864400	Genic enhancers	Brain Hippocampus Middle	brain
36	chr15:41855400-41877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:41855400-41877200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:41855600-41858600	Weak transcription	Osteobl	bone
39	chr15:41855600-41860400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:41855600-41860600	Weak transcription	NH-A	brain
41	chr15:41856000-41858600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:41856200-41858600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:41856200-41859200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:41856200-41859600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:41856200-41860000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:41856400-41859000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:41856400-41861800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:41856800-41860400	Weak transcription	Lung	lung
49	chr15:41856800-41861400	Genic enhancers	Brain Angular Gyrus	brain
50	chr15:41857000-41858800	Weak transcription	HSMM	muscle

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