Variant report

Variant	rs61586836
Chromosome Location	chr22:33211497-33211498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:33210332-33222413	ProgFib	skin:	n/a	n/a
2	POLR2A	chr22:33199121-33217873	HepG2	liver:	n/a	n/a
3	POLR2A	chr22:33201462-33217796	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32162110-32166713..22:33208968-33216036	Hela-S3	cervix:
2	22:32920308-32927723..22:33208968-33216036	H1-hESC	embryonic stem cell:	embryo
3	chr22:33195652..33199571-chr22:33200330..33212129,15	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TIMP3-2	chr22:33210162-33216253	ENSG00000251658

No data

Variant related genes	Relation type
ENSG00000197047	TF binding region
ENSG00000185666	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16991152	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16991252	1.00[EUR][1000 genomes]
rs16991318	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57213553	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58338477	1.00[EUR][1000 genomes]
rs58394026	1.00[EUR][1000 genomes]
rs5998641	1.00[EUR][1000 genomes]
rs5998642	1.00[EUR][1000 genomes]
rs7288955	1.00[EUR][1000 genomes]
rs73410635	1.00[EUR][1000 genomes]
rs73410648	1.00[EUR][1000 genomes]
rs73881789	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881802	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73881904	1.00[EUR][1000 genomes]
rs73881908	1.00[EUR][1000 genomes]
rs73881909	1.00[EUR][1000 genomes]
rs73885105	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73885108	1.00[EUR][1000 genomes]
rs73885112	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73885113	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73885114	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73885120	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73885121	1.00[EUR][1000 genomes]
rs73885123	1.00[EUR][1000 genomes]
rs8138110	1.00[EUR][1000 genomes]
rs8141493	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8142144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8142191	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33200400-33216200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr22:33200600-33215200	Weak transcription	NHEK	skin
3	chr22:33201000-33214400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr22:33201000-33227400	Weak transcription	Aorta	Aorta
5	chr22:33201200-33211800	Weak transcription	Gastric	stomach
6	chr22:33201200-33222800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:33201600-33226200	Weak transcription	NH-A	brain
8	chr22:33202000-33220000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr22:33202600-33211800	Weak transcription	Brain Substantia Nigra	brain
10	chr22:33203200-33223600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr22:33204600-33211800	Weak transcription	Colonic Mucosa	Colon
12	chr22:33204600-33220200	Weak transcription	Brain Hippocampus Middle	brain
13	chr22:33204800-33227800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr22:33205000-33211800	Weak transcription	HSMM	muscle
15	chr22:33205000-33214600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr22:33205000-33216200	Weak transcription	NHLF	lung
17	chr22:33205200-33214200	Enhancers	Colon Smooth Muscle	Colon
18	chr22:33205200-33219800	Weak transcription	Brain Angular Gyrus	brain
19	chr22:33206000-33214200	Weak transcription	Fetal Lung	lung
20	chr22:33206400-33220800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr22:33206600-33211800	Weak transcription	Placenta	Placenta
22	chr22:33206600-33213400	Weak transcription	Brain Anterior Caudate	brain
23	chr22:33206600-33214200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr22:33206600-33214200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr22:33206600-33219800	Strong transcription	Osteobl	bone
26	chr22:33206800-33211800	Weak transcription	Liver	Liver
27	chr22:33206800-33213400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr22:33206800-33214600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr22:33206800-33214800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr22:33206800-33224600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr22:33207000-33212000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr22:33207000-33212000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr22:33207000-33212200	Weak transcription	Fetal Intestine Small	intestine
34	chr22:33207000-33214600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr22:33207000-33217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr22:33207000-33226200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr22:33207200-33211800	Weak transcription	Fetal Intestine Large	intestine
38	chr22:33207200-33213400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr22:33207800-33215000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr22:33208200-33211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr22:33208600-33212600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr22:33208800-33211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr22:33208800-33212400	Enhancers	Rectal Smooth Muscle	rectum
44	chr22:33209000-33211600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr22:33209000-33214800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr22:33209200-33212200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr22:33209400-33215000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr22:33210000-33211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr22:33210000-33212000	Enhancers	Fetal Muscle Leg	muscle
50	chr22:33210400-33212600	Enhancers	HSMMtube	muscle

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