The 2.0 version of rSNPBase

Variant report

Variant rs58394026
Chromosome Location chr22:33196313-33196314
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:33176800-33196600 Weak transcription HUES48 Cell Line embryonic stem cell
2 chr22:33185200-33197200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr22:33191400-33197000 Weak transcription Fetal Intestine Small intestine
4 chr22:33193000-33196600 Weak transcription Left Ventricle heart
5 chr22:33193000-33196800 Weak transcription Brain Angular Gyrus brain
6 chr22:33193000-33197200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr22:33193200-33196600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr22:33193200-33196600 Weak transcription Fetal Muscle Trunk muscle
9 chr22:33193200-33196600 Weak transcription Right Ventricle heart
10 chr22:33193200-33196800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr22:33193200-33196800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr22:33193200-33196800 Weak transcription Fetal Lung lung
13 chr22:33193200-33197000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr22:33193200-33197000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr22:33193200-33197000 Weak transcription Liver Liver
16 chr22:33193200-33197200 Weak transcription Muscle Satellite Cultured Cells --
17 chr22:33193200-33197200 Weak transcription Brain Substantia Nigra brain
18 chr22:33193200-33197200 Weak transcription Esophagus oesophagus
19 chr22:33193200-33197200 Weak transcription Pancreas Pancrea
20 chr22:33193400-33196400 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr22:33193400-33196800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr22:33193400-33196800 Weak transcription HMEC breast
23 chr22:33193400-33197000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr22:33193400-33197000 Weak transcription Brain Inferior Temporal Lobe brain
25 chr22:33193400-33197200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr22:33193400-33197200 Weak transcription Brain Cingulate Gyrus brain
27 chr22:33193600-33197000 Weak transcription Brain Hippocampus Middle brain
28 chr22:33193600-33197000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr22:33193800-33196800 Weak transcription HepG2 liver
30 chr22:33194000-33196600 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr22:33195000-33197000 Enhancers Placenta Placenta
32 chr22:33195000-33197600 Enhancers Placenta Amnion Placenta Amnion
33 chr22:33195400-33196800 Enhancers HSMM muscle
34 chr22:33195400-33197200 Enhancers Fetal Muscle Leg muscle
35 chr22:33195400-33197200 Enhancers HSMMtube muscle
36 chr22:33195600-33196600 Enhancers Adipose Nuclei Adipose
37 chr22:33195600-33197000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr22:33195600-33197000 Enhancers Fetal Stomach stomach
39 chr22:33195600-33197200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr22:33195600-33197200 Enhancers Lung lung
41 chr22:33195600-33197200 Enhancers Spleen Spleen
42 chr22:33195800-33196600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
43 chr22:33195800-33197400 Enhancers Fetal Heart heart
44 chr22:33196000-33196800 Enhancers Colon Smooth Muscle Colon
45 chr22:33196000-33196800 Enhancers Osteobl bone
46 chr22:33196000-33197200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr22:33196000-33197400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr22:33196200-33196600 Enhancers Duodenum Smooth Muscle Duodenum
49 chr22:33196200-33196600 Enhancers Skeletal Muscle Female skeletal muscle
50 chr22:33196200-33196600 Active TSS Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015