Variant report

Variant	rs73881787
Chromosome Location	chr22:33146059-33146060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33144568..33146477-chr22:33146866..33149245,2	MCF-7	breast:
2	chr22:32925044..32925606-chr22:33146012..33146679,2	K562	blood:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16991252	1.00[AMR][1000 genomes]
rs16991417	1.00[AMR][1000 genomes]
rs16991442	1.00[AMR][1000 genomes]
rs35396081	1.00[AMR][1000 genomes]
rs55843131	1.00[AMR][1000 genomes]
rs56283234	1.00[AMR][1000 genomes]
rs57139579	1.00[AMR][1000 genomes]
rs57490118	1.00[AMR][1000 genomes]
rs57620882	1.00[AMR][1000 genomes]
rs57966112	1.00[AMR][1000 genomes]
rs58394026	1.00[AMR][1000 genomes]
rs58627239	1.00[AMR][1000 genomes]
rs58709981	1.00[AMR][1000 genomes]
rs58897867	1.00[AMR][1000 genomes]
rs5998647	1.00[AMR][1000 genomes]
rs60903857	1.00[AMR][1000 genomes]
rs73881773	1.00[AMR][1000 genomes]
rs73881794	1.00[AMR][1000 genomes]
rs73881795	1.00[AMR][1000 genomes]
rs73881801	1.00[AMR][1000 genomes]
rs73881903	1.00[AMR][1000 genomes]
rs73881907	1.00[AMR][1000 genomes]
rs73885104	1.00[AMR][1000 genomes]
rs73885107	1.00[AMR][1000 genomes]
rs73885108	1.00[AMR][1000 genomes]
rs73885115	1.00[AMR][1000 genomes]
rs73885117	1.00[AMR][1000 genomes]
rs73885122	1.00[AMR][1000 genomes]
rs8142286	1.00[AMR][1000 genomes]
rs9619287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33141400-33148400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr22:33141600-33150600	Weak transcription	Spleen	Spleen
3	chr22:33142000-33146200	Weak transcription	Fetal Thymus	thymus
4	chr22:33142200-33146600	Weak transcription	Hela-S3	cervix
5	chr22:33142600-33150600	Weak transcription	HMEC	breast
6	chr22:33143000-33148600	Weak transcription	Right Ventricle	heart
7	chr22:33143000-33149800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr22:33143000-33150400	Weak transcription	Lung	lung
9	chr22:33143000-33150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr22:33143200-33148600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr22:33143200-33148600	Weak transcription	Fetal Muscle Leg	muscle
12	chr22:33143200-33150600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr22:33144000-33148000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr22:33144000-33148200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:33144000-33148400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:33144000-33148600	Weak transcription	Adipose Nuclei	Adipose
17	chr22:33144000-33149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr22:33144000-33149200	Weak transcription	Right Atrium	heart
19	chr22:33144000-33150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr22:33144000-33150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr22:33144200-33148400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr22:33144800-33148200	Weak transcription	Fetal Stomach	stomach
23	chr22:33144800-33150400	Weak transcription	Left Ventricle	heart
24	chr22:33145200-33147200	Weak transcription	Liver	Liver
25	chr22:33145800-33150400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links