Variant report

Variant	rs73881903
Chromosome Location	chr22:33269832-33269833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr22:33269472-33269978	K562	blood:	n/a	n/a
2	TAL1	chr22:33269351-33270005	K562	blood:	n/a	n/a
3	CEBPD	chr22:33269532-33269892	K562	blood:	n/a	n/a
4	TEAD4	chr22:33269522-33269952	K562	blood:	n/a	n/a
5	TBL1XR1	chr22:33269337-33269978	K562	blood:	n/a	n/a
6	TBP	chr22:33269611-33270022	K562	blood:	n/a	n/a
7	RPC155	chr22:33269666-33270320	K562	blood:	n/a	n/a
8	POLR2A	chr22:33269757-33269884	K562	blood:	n/a	n/a
9	EGR1	chr22:33269669-33269929	K562	blood:	n/a	n/a
10	MYC	chr22:33269696-33269840	K562	blood:	n/a	n/a
11	POLR2A	chr22:33269581-33269868	K562	blood:	n/a	n/a
12	JUND	chr22:33269446-33269997	K562	blood:	n/a	n/a
13	MYC	chr22:33269400-33269984	K562	blood:	n/a	chr22:33269621-33269630
14	GATA1	chr22:33269349-33270092	PBDE	blood:	n/a	chr22:33269787-33269796 chr22:33269784-33269800 chr22:33269787-33269797 chr22:33269782-33269803 chr22:33269789-33269796 chr22:33269504-33269513
15	MAZ	chr22:33269297-33269926	K562	blood:	n/a	chr22:33269621-33269630
16	BHLHE40	chr22:33269296-33269967	K562	blood:	n/a	n/a
17	ZMIZ1	chr22:33269455-33269955	K562	blood:	n/a	n/a
18	RCOR1	chr22:33269389-33270026	K562	blood:	n/a	n/a
19	EP300	chr22:33269321-33270001	K562	blood:	n/a	n/a
20	GATA2	chr22:33269543-33269964	K562	blood:	n/a	chr22:33269787-33269796 chr22:33269784-33269800 chr22:33269787-33269797 chr22:33269782-33269803 chr22:33269789-33269796
21	GATA2	chr22:33269597-33269883	K562	blood:	n/a	chr22:33269787-33269796 chr22:33269784-33269800 chr22:33269787-33269797 chr22:33269782-33269803 chr22:33269789-33269796
22	REST	chr22:33269612-33269862	K562	blood:	n/a	n/a
23	TEAD4	chr22:33269570-33269880	K562	blood:	n/a	n/a
24	CEBPB	chr22:33269570-33269894	K562	blood:	n/a	n/a
25	MXI1	chr22:33269512-33269917	K562	blood:	n/a	n/a
26	ATF1	chr22:33269514-33269912	K562	blood:	n/a	n/a
27	MAFK	chr22:33269440-33269947	K562	blood:	n/a	n/a
28	RCOR1	chr22:33269451-33269855	K562	blood:	n/a	n/a
29	MAFF	chr22:33269420-33269942	K562	blood:	n/a	n/a
30	EGR1	chr22:33269668-33269901	K562	blood:	n/a	n/a
31	STAT5A	chr22:33269579-33269930	K562	blood:	n/a	n/a
32	NR2F2	chr22:33269579-33269880	K562	blood:	n/a	n/a
33	CEBPB	chr22:33269597-33269905	K562	blood:	n/a	n/a
34	CEBPD	chr22:33269559-33269907	K562	blood:	n/a	n/a
35	GATA1	chr22:33269291-33269948	K562	blood:	n/a	chr22:33269787-33269796 chr22:33269784-33269800 chr22:33269787-33269797 chr22:33269782-33269803 chr22:33269789-33269796 chr22:33269504-33269513
36	ARID3A	chr22:33269471-33269936	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33257978..33261996-chr22:33266633..33269916,3	K562	blood:

Variant related genes	Relation type
SYN3	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16991252	1.00[AMR][1000 genomes]
rs16991417	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16991442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35396081	1.00[AMR][1000 genomes]
rs55843131	1.00[AMR][1000 genomes]
rs56283234	1.00[AMR][1000 genomes]
rs57139579	1.00[AMR][1000 genomes]
rs57490118	1.00[AMR][1000 genomes]
rs57620882	1.00[AMR][1000 genomes]
rs57966112	1.00[AMR][1000 genomes]
rs58329553	0.87[AFR][1000 genomes]
rs58394026	1.00[AMR][1000 genomes]
rs58627239	1.00[AMR][1000 genomes]
rs58709981	1.00[AMR][1000 genomes]
rs5998647	1.00[AMR][1000 genomes]
rs60903857	1.00[AMR][1000 genomes]
rs73881787	1.00[AMR][1000 genomes]
rs73881794	1.00[AMR][1000 genomes]
rs73881795	1.00[AMR][1000 genomes]
rs73881801	1.00[AMR][1000 genomes]
rs73881907	1.00[AMR][1000 genomes]
rs73885104	1.00[AMR][1000 genomes]
rs73885107	1.00[AMR][1000 genomes]
rs73885108	1.00[AMR][1000 genomes]
rs73885115	1.00[AMR][1000 genomes]
rs73885117	1.00[AMR][1000 genomes]
rs73885122	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8142286	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9619287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3599	chr22:33230106-33274789	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33227000-33272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
3	chr22:33257800-33270000	Weak transcription	Fetal Intestine Large	intestine
4	chr22:33257800-33282000	Weak transcription	HepG2	liver
5	chr22:33259000-33270800	Weak transcription	Fetal Lung	lung
6	chr22:33259400-33270200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr22:33261200-33270400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:33268600-33270800	Enhancers	K562	blood
11	chr22:33269400-33272400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr22:33269400-33272400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr22:33269600-33271400	Enhancers	Fetal Intestine Small	intestine
14	chr22:33269600-33272200	Enhancers	Fetal Thymus	thymus

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