Variant report

Variant	rs73885115
Chromosome Location	chr22:33233208-33233209
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32920308-32927723..22:33232758-33234096	K562	blood:
2	22:33232758-33234096..22:33339333-33353583	K562	blood:
3	chr22:33231459..33233462-chr22:33245687..33247354,2	K562	blood:
4	chr22:33232248..33234896-chr22:33237867..33240280,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16991252	1.00[AMR][1000 genomes]
rs16991417	1.00[AMR][1000 genomes]
rs16991442	1.00[AMR][1000 genomes]
rs35396081	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55843131	1.00[AMR][1000 genomes]
rs56283234	1.00[AMR][1000 genomes]
rs57139579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57490118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57620882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57966112	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58394026	1.00[AMR][1000 genomes]
rs58627239	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58709981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5998647	1.00[AMR][1000 genomes]
rs60903857	1.00[AMR][1000 genomes]
rs73881773	1.00[AMR][1000 genomes]
rs73881787	1.00[AMR][1000 genomes]
rs73881794	1.00[AMR][1000 genomes]
rs73881795	1.00[AMR][1000 genomes]
rs73881801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881903	1.00[AMR][1000 genomes]
rs73881907	1.00[AMR][1000 genomes]
rs73885104	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885108	1.00[AMR][1000 genomes]
rs73885116	0.94[AFR][1000 genomes]
rs73885117	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885122	1.00[AMR][1000 genomes]
rs8142286	1.00[AMR][1000 genomes]
rs9619287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3599	chr22:33230106-33274789	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33211000-33240400	Genic enhancers	Left Ventricle	heart
2	chr22:33217800-33248600	Weak transcription	Gastric	stomach
3	chr22:33222200-33236000	Enhancers	Right Atrium	heart
4	chr22:33222600-33240400	Genic enhancers	Adipose Nuclei	Adipose
5	chr22:33222600-33258800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr22:33222800-33238200	Genic enhancers	Fetal Muscle Leg	muscle
7	chr22:33223400-33235400	Weak transcription	Fetal Intestine Large	intestine
8	chr22:33224200-33233400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr22:33224800-33234200	Weak transcription	Fetal Kidney	kidney
10	chr22:33226200-33236200	Weak transcription	Fetal Intestine Small	intestine
11	chr22:33226400-33233800	Weak transcription	NHEK	skin
12	chr22:33226600-33233600	Strong transcription	Osteobl	bone
13	chr22:33226600-33235600	Weak transcription	NH-A	brain
14	chr22:33226600-33238000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr22:33226600-33238400	Enhancers	Fetal Heart	heart
16	chr22:33227000-33235000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr22:33227000-33272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr22:33227200-33234200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr22:33227400-33235400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr22:33227600-33237200	Strong transcription	HepG2	liver
21	chr22:33227600-33248800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr22:33227600-33249400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr22:33227800-33236800	Weak transcription	Liver	Liver
24	chr22:33227800-33252200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr22:33227800-33253200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr22:33228000-33234200	Weak transcription	Fetal Lung	lung
27	chr22:33228000-33236800	Weak transcription	Brain Angular Gyrus	brain
28	chr22:33228000-33245000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr22:33228000-33252200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr22:33228000-33252600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr22:33228200-33233800	Weak transcription	Brain Hippocampus Middle	brain
32	chr22:33228600-33233600	Strong transcription	HMEC	breast
33	chr22:33228600-33233800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr22:33228600-33235600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr22:33228800-33236800	Genic enhancers	Right Ventricle	heart
36	chr22:33229000-33235400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr22:33230800-33234600	Strong transcription	HSMM	muscle
38	chr22:33231000-33233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr22:33231200-33233800	Weak transcription	Aorta	Aorta
40	chr22:33231200-33233800	Weak transcription	Ovary	ovary
41	chr22:33231200-33234000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr22:33231200-33245400	Weak transcription	NHLF	lung
43	chr22:33231600-33233400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr22:33231600-33234400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr22:33231800-33240400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr22:33232000-33233400	Enhancers	Fetal Thymus	thymus
47	chr22:33232000-33234000	Enhancers	Colon Smooth Muscle	Colon
48	chr22:33232200-33237400	Enhancers	Rectal Smooth Muscle	rectum
49	chr22:33232200-33239800	Genic enhancers	Fetal Stomach	stomach
50	chr22:33232400-33235800	Enhancers	Spleen	Spleen

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