Variant report

Variant	rs61587692
Chromosome Location	chr3:18024540-18024541
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs58530294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58544197	1.00[AMR][1000 genomes]
rs59436468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817390	1.00[AMR][1000 genomes]
rs73817392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817393	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817433	0.81[AFR][1000 genomes]
rs73817435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819818	1.00[AMR][1000 genomes]
rs73819819	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73819884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634870	1.00[AMR][1000 genomes]
rs7644283	1.00[AMR][1000 genomes]
rs7647770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18019200-18031200	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:18021800-18027200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:18022200-18027000	Weak transcription	Fetal Heart	heart
4	chr3:18022400-18029600	Enhancers	Thymus	Thymus
5	chr3:18022600-18027800	Weak transcription	Fetal Stomach	stomach
6	chr3:18022800-18026600	Enhancers	Fetal Thymus	thymus
7	chr3:18023600-18024600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:18023800-18025600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr3:18023800-18025800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:18024400-18024800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:18024400-18025000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:18024400-18025000	Enhancers	Dnd41	blood
13	chr3:18024400-18025400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:18024400-18025400	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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