Variant report

Variant	rs73817390
Chromosome Location	chr3:17907844-17907845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58530294	1.00[AMR][1000 genomes]
rs58544197	1.00[AMR][1000 genomes]
rs59436468	1.00[AMR][1000 genomes]
rs61587692	1.00[AMR][1000 genomes]
rs73817392	1.00[AMR][1000 genomes]
rs73817393	1.00[AMR][1000 genomes]
rs73817421	1.00[AMR][1000 genomes]
rs73817422	1.00[AMR][1000 genomes]
rs73817435	1.00[AMR][1000 genomes]
rs73817441	1.00[AMR][1000 genomes]
rs73817445	1.00[AMR][1000 genomes]
rs73817454	1.00[AMR][1000 genomes]
rs73819818	1.00[AMR][1000 genomes]
rs73819819	1.00[AMR][1000 genomes]
rs73819878	1.00[AMR][1000 genomes]
rs73819884	1.00[AMR][1000 genomes]
rs7634870	1.00[AMR][1000 genomes]
rs7644283	1.00[AMR][1000 genomes]
rs7647770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17903400-17913600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:17904200-17908000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:17904200-17908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:17904200-17936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:17904400-17908600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:17904800-17909400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:17905600-17909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:17907400-17908600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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