Variant report

Variant	rs61638663
Chromosome Location	chr5:37013358-37013359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10941319	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11743833	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12153359	0.90[ASN][1000 genomes]
rs12187383	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12188075	0.82[ASN][1000 genomes]
rs12516349	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12520272	0.92[ASN][1000 genomes]
rs12520562	0.86[ASN][1000 genomes]
rs16903403	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16903413	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16903419	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16903427	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16903429	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16903442	0.94[ASN][1000 genomes]
rs16903456	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16903466	0.88[ASN][1000 genomes]
rs16903477	0.86[ASN][1000 genomes]
rs2365838	0.94[ASN][1000 genomes]
rs3776588	0.90[ASN][1000 genomes]
rs3822471	0.90[ASN][1000 genomes]
rs56680779	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60643425	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60730034	0.88[ASN][1000 genomes]
rs62654863	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv1017947	chr5:36927652-37017180	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv1029936	chr5:36927652-37025871	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv1029319	chr5:36928654-37017180	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv1030883	chr5:36932448-37039857	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	esv1803659	chr5:36935129-37039857	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	nsv1033928	chr5:36947293-37039857	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	nsv917880	chr5:36948778-37115342	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
15	nsv881592	chr5:36954812-37027258	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
16	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
17	nsv881136	chr5:36976160-37029885	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
18	nsv597822	chr5:36997953-37147152	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
19	nsv880502	chr5:37002638-37023898	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36949600-37086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:36954400-37026400	Weak transcription	Pancreas	Pancrea
3	chr5:36954800-37023600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:36962400-37028400	Weak transcription	Spleen	Spleen
5	chr5:36965800-37018600	Weak transcription	Psoas Muscle	Psoas
6	chr5:36968800-37031200	Weak transcription	Aorta	Aorta
7	chr5:36969800-37065000	Weak transcription	Stomach Mucosa	stomach
8	chr5:36972600-37019200	Weak transcription	Brain Angular Gyrus	brain
9	chr5:36976600-37019200	Weak transcription	NHLF	lung
10	chr5:36976600-37022800	Weak transcription	Fetal Brain Male	brain
11	chr5:36979800-37057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:36986200-37015400	Weak transcription	Colonic Mucosa	Colon
13	chr5:36986200-37015600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:36991000-37064600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:36996800-37022400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:36997000-37020600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:36997600-37018200	Weak transcription	Left Ventricle	heart
18	chr5:36997600-37064600	Weak transcription	Esophagus	oesophagus
19	chr5:37000400-37015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:37000800-37015200	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:37000800-37026400	Weak transcription	Ovary	ovary
22	chr5:37001200-37014800	Weak transcription	Brain Substantia Nigra	brain
23	chr5:37001200-37066200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:37001400-37022000	Weak transcription	Fetal Heart	heart
25	chr5:37002000-37026400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:37002600-37017000	Weak transcription	HSMMtube	muscle
27	chr5:37002600-37017800	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:37002600-37026400	Weak transcription	Small Intestine	intestine
29	chr5:37005200-37026400	Weak transcription	Right Ventricle	heart
30	chr5:37005200-37041800	Weak transcription	Lung	lung
31	chr5:37006800-37014800	Weak transcription	HepG2	liver
32	chr5:37009200-37016200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:37009200-37049200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:37009400-37016000	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:37009600-37014800	Weak transcription	NHDF-Ad	bronchial
36	chr5:37009600-37015800	Weak transcription	Brain Germinal Matrix	brain
37	chr5:37009600-37016000	Weak transcription	HMEC	breast
38	chr5:37009800-37016000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:37009800-37016200	Weak transcription	HUVEC	blood vessel
40	chr5:37010000-37017000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:37010200-37043600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr5:37010400-37014400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr5:37010400-37015200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr5:37010400-37016000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:37010800-37014200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr5:37010800-37014800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr5:37010800-37015200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr5:37010800-37015200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr5:37010800-37015200	Weak transcription	Thymus	Thymus
50	chr5:37010800-37015800	Weak transcription	Fetal Lung	lung

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