Variant report

Variant	rs2365838
Chromosome Location	chr5:36999295-36999296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36744805..36746401-chr5:36997708..36999991,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10941319	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743833	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11744960	0.84[ASN][1000 genomes]
rs11745128	0.84[ASN][1000 genomes]
rs12153359	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187383	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188075	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12513653	0.84[ASN][1000 genomes]
rs12516349	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12520272	0.94[ASN][1000 genomes]
rs12520324	0.84[ASN][1000 genomes]
rs12520562	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12521488	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16903365	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16903373	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16903403	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16903413	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16903419	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16903427	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16903429	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16903442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903456	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903466	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16903469	0.88[AMR][1000 genomes]
rs16903477	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2365495	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3776588	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3849756	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56680779	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56999464	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57686895	0.84[ASN][1000 genomes]
rs60633925	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60643425	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60730034	0.89[ASN][1000 genomes]
rs61638663	0.94[ASN][1000 genomes]
rs62654863	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv1023362	chr5:36927652-37010749	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv1017947	chr5:36927652-37017180	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv1029936	chr5:36927652-37025871	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv1029319	chr5:36928654-37017180	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv1030883	chr5:36932448-37039857	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	esv1803659	chr5:36935129-37039857	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	nsv1033928	chr5:36947293-37039857	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
15	nsv917880	chr5:36948778-37115342	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv881592	chr5:36954812-37027258	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
17	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv881136	chr5:36976160-37029885	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
19	nsv597822	chr5:36997953-37147152	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36949600-37086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:36951400-37004400	Weak transcription	Right Ventricle	heart
3	chr5:36954400-37026400	Weak transcription	Pancreas	Pancrea
4	chr5:36954800-37023600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:36955400-37010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:36962400-37028400	Weak transcription	Spleen	Spleen
7	chr5:36965800-37018600	Weak transcription	Psoas Muscle	Psoas
8	chr5:36968800-37031200	Weak transcription	Aorta	Aorta
9	chr5:36969800-37065000	Weak transcription	Stomach Mucosa	stomach
10	chr5:36972600-37019200	Weak transcription	Brain Angular Gyrus	brain
11	chr5:36976400-37010600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:36976600-37008800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:36976600-37019200	Weak transcription	NHLF	lung
14	chr5:36976600-37022800	Weak transcription	Fetal Brain Male	brain
15	chr5:36977000-37002000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:36977000-37003400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:36978000-37004400	Weak transcription	Fetal Intestine Small	intestine
18	chr5:36978200-37004200	Weak transcription	Fetal Brain Female	brain
19	chr5:36979000-37002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:36979800-37057800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:36983000-37000400	Weak transcription	HMEC	breast
22	chr5:36983800-36999400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:36985400-37008800	Weak transcription	Brain Germinal Matrix	brain
24	chr5:36986000-36999400	Weak transcription	Osteobl	bone
25	chr5:36986000-36999600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr5:36986000-37000200	Weak transcription	Fetal Lung	lung
27	chr5:36986000-37000200	Weak transcription	HUVEC	blood vessel
28	chr5:36986000-37001000	Weak transcription	HepG2	liver
29	chr5:36986000-37004400	Weak transcription	Fetal Stomach	stomach
30	chr5:36986000-37006400	Weak transcription	NHEK	skin
31	chr5:36986200-37000600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:36986200-37000600	Weak transcription	NHDF-Ad	bronchial
33	chr5:36986200-37001200	Weak transcription	Brain Anterior Caudate	brain
34	chr5:36986200-37002000	Weak transcription	Small Intestine	intestine
35	chr5:36986200-37015400	Weak transcription	Colonic Mucosa	Colon
36	chr5:36986200-37015600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:36986400-36999800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:36988200-36999800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:36991000-37012400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr5:36991000-37064600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:36992200-37013000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr5:36993000-37011800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr5:36993200-37011800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr5:36993800-37005200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr5:36994000-37011800	Strong transcription	Dnd41	blood
46	chr5:36994400-37001600	Strong transcription	Hela-S3	cervix
47	chr5:36994600-37011600	Strong transcription	Placenta	Placenta
48	chr5:36994600-37013200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr5:36995000-37000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr5:36995000-37005000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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