Variant report

Variant	rs61648937
Chromosome Location	chr15:41407730-41407731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41406758..41409601-chr15:41707795..41710639,2	MCF-7	breast:
2	chr15:41406937..41409542-chr15:41521164..41524731,5	K562	blood:
3	chr15:41407191..41409421-chr15:41835564..41837898,2	MCF-7	breast:
4	chr15:41406745..41409392-chr15:41623521..41626579,5	K562	blood:
5	chr15:41056057..41058777-chr15:41406413..41409021,2	K562	blood:
6	chr15:41407604..41409854-chr15:41574990..41577590,2	K562	blood:
7	chr15:41220723..41224054-chr15:41407218..41409948,5	K562	blood:
8	chr15:41056057..41057921-chr15:41407305..41409021,2	K562	blood:
9	chr15:40875804..40877878-chr15:41405943..41408049,2	K562	blood:
10	chr15:41407574..41409310-chr15:41622908..41625714,2	MCF-7	breast:
11	chr15:41220723..41224054-chr15:41406979..41409349,3	K562	blood:
12	chr15:41407188..41409566-chr15:41523202..41527124,5	K562	blood:
13	chr15:41406809..41409126-chr15:41623521..41625356,3	K562	blood:
14	chr15:41198680..41200257-chr15:41407183..41410024,3	MCF-7	breast:
15	chr15:41407358..41408983-chr15:41521863..41524451,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000103932	Chromatin interaction
ENSG00000137804	Chromatin interaction
ENSG00000137815	Chromatin interaction
ENSG00000178997	Chromatin interaction
ENSG00000251161	Chromatin interaction
ENSG00000128917	Chromatin interaction
ENSG00000104147	Chromatin interaction
ENSG00000137880	Chromatin interaction
ENSG00000247556	Chromatin interaction
ENSG00000187446	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11852799	0.87[ASN][1000 genomes]
rs11857484	0.87[ASN][1000 genomes]
rs2013359	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28523607	0.81[EUR][1000 genomes]
rs28547298	0.85[ASN][1000 genomes]
rs28656781	0.87[ASN][1000 genomes]
rs28770904	0.84[ASN][1000 genomes]
rs28809504	0.87[ASN][1000 genomes]
rs28874085	0.81[ASN][1000 genomes]
rs28880687	0.87[ASN][1000 genomes]
rs2928155	0.87[ASN][1000 genomes]
rs2955810	0.87[ASN][1000 genomes]
rs35722320	0.87[ASN][1000 genomes]
rs3959554	0.87[ASN][1000 genomes]
rs3986303	0.87[ASN][1000 genomes]
rs561821	0.85[ASN][1000 genomes]
rs56829576	0.82[ASN][1000 genomes]
rs58330134	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58617586	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59926382	0.81[EUR][1000 genomes]
rs61592157	0.81[EUR][1000 genomes]
rs66520648	0.81[EUR][1000 genomes]
rs66663059	0.81[EUR][1000 genomes]
rs68180828	0.81[EUR][1000 genomes]
rs7175362	0.87[ASN][1000 genomes]
rs72737713	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72737726	0.80[EUR][1000 genomes]
rs72737734	0.87[ASN][1000 genomes]
rs73396323	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8023991	0.87[ASN][1000 genomes]
rs8030657	0.87[ASN][1000 genomes]
rs8031159	0.85[ASN][1000 genomes]
rs9888708	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv3355696	chr15:41407285-41409833	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41406400-41409200	Active TSS	GM12878-XiMat	blood
2	chr15:41406600-41408000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:41406600-41409400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr15:41406800-41407800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:41406800-41409000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:41406800-41409000	Active TSS	HMEC	breast
7	chr15:41406800-41409000	Active TSS	K562	blood
8	chr15:41406800-41409200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:41406800-41409200	Active TSS	A549	lung
10	chr15:41406800-41409600	Active TSS	Right Ventricle	heart
11	chr15:41407000-41407800	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr15:41407000-41407800	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr15:41407000-41407800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr15:41407000-41407800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr15:41407000-41407800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:41407000-41407800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:41407000-41407800	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr15:41407000-41407800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr15:41407000-41408000	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr15:41407000-41409000	Active TSS	Brain Angular Gyrus	brain
21	chr15:41407000-41409000	Active TSS	Brain Cingulate Gyrus	brain
22	chr15:41407000-41409000	Active TSS	Fetal Kidney	kidney
23	chr15:41407000-41409000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr15:41407000-41409000	Active TSS	NH-A	brain
25	chr15:41407000-41409000	Active TSS	NHDF-Ad	bronchial
26	chr15:41407000-41409000	Active TSS	Osteobl	bone
27	chr15:41407000-41409200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:41407000-41409200	Active TSS	Psoas Muscle	Psoas
29	chr15:41407000-41409400	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr15:41407000-41409400	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr15:41407000-41409600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:41407000-41409600	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr15:41407200-41407800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr15:41407200-41407800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr15:41407200-41407800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr15:41407200-41407800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:41407200-41407800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:41407200-41407800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr15:41407200-41407800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:41407200-41407800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:41407200-41407800	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr15:41407200-41407800	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr15:41407200-41407800	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr15:41407200-41407800	Flanking Active TSS	Fetal Lung	lung
45	chr15:41407200-41407800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr15:41407200-41407800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr15:41407200-41407800	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr15:41407200-41408000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr15:41407200-41408000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr15:41407200-41408000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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