Variant report

Variant	rs58330134
Chromosome Location	chr15:41446532-41446533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10152631	0.89[EUR][1000 genomes]
rs11070323	0.82[EUR][1000 genomes]
rs11852799	0.95[ASN][1000 genomes]
rs11857484	0.95[ASN][1000 genomes]
rs17718117	0.80[EUR][1000 genomes]
rs2013359	0.88[ASN][1000 genomes]
rs28459903	0.92[EUR][1000 genomes]
rs28510224	0.81[EUR][1000 genomes]
rs28523607	0.95[EUR][1000 genomes]
rs28547298	0.93[ASN][1000 genomes]
rs28656781	0.95[ASN][1000 genomes]
rs28770904	0.93[ASN][1000 genomes]
rs28809504	0.91[ASN][1000 genomes]
rs28874085	0.91[ASN][1000 genomes]
rs28880687	0.95[ASN][1000 genomes]
rs2928155	0.95[ASN][1000 genomes]
rs2955810	0.91[ASN][1000 genomes]
rs35722320	0.95[ASN][1000 genomes]
rs3959554	0.95[ASN][1000 genomes]
rs3986303	0.95[ASN][1000 genomes]
rs561821	0.93[ASN][1000 genomes]
rs57126801	0.83[EUR][1000 genomes]
rs58547976	0.83[EUR][1000 genomes]
rs58677271	0.80[EUR][1000 genomes]
rs58819307	0.84[EUR][1000 genomes]
rs59926382	0.95[EUR][1000 genomes]
rs61592157	0.95[EUR][1000 genomes]
rs61648937	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66520648	0.95[EUR][1000 genomes]
rs66663059	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66993182	0.89[EUR][1000 genomes]
rs67259166	0.81[EUR][1000 genomes]
rs68180828	0.95[EUR][1000 genomes]
rs7166556	0.85[EUR][1000 genomes]
rs7178739	0.89[EUR][1000 genomes]
rs72737713	0.86[ASN][1000 genomes]
rs72737734	0.91[ASN][1000 genomes]
rs72737761	0.84[EUR][1000 genomes]
rs73396323	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402954	0.89[EUR][1000 genomes]
rs8023991	0.95[ASN][1000 genomes]
rs8030657	0.95[ASN][1000 genomes]
rs8030965	0.87[ASN][1000 genomes]
rs8031159	0.93[ASN][1000 genomes]
rs9888708	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41445600-41447000	Enhancers	HepG2	liver
2	chr15:41446000-41446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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