Variant report

Variant	rs7166556
Chromosome Location	chr15:41527374-41527375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41522897..41527944-chr15:41573906..41578128,9	K562	blood:
2	chr15:41243946..41245901-chr15:41525815..41527897,2	K562	blood:
3	chr15:41523511..41525481-chr15:41526363..41527921,2	K562	blood:

Variant related genes	Relation type
ENSG00000247556	Chromatin interaction
ENSG00000128965	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10152631	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070323	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857726	0.92[ASN][1000 genomes]
rs16971693	0.81[GIH][hapmap]
rs1866400	0.81[GIH][hapmap]
rs1971131	0.83[GIH][hapmap]
rs28459903	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28510224	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28523607	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41442144	0.83[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap]
rs57126801	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58330134	0.85[EUR][1000 genomes]
rs58547976	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58677271	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58819307	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59926382	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61592157	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66520648	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66663059	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66723852	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66993182	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67259166	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67891871	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68180828	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7178739	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7179231	0.81[GIH][hapmap]
rs7179969	0.81[GIH][hapmap]
rs73396323	0.86[EUR][1000 genomes]
rs73402954	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8038834	0.83[GIH][hapmap]
rs8039934	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv1844058	chr15:41511916-41548948	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:41524200-41533400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41524200-41535800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:41524200-41536600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:41524200-41546200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:41524200-41554800	Weak transcription	Fetal Thymus	thymus
7	chr15:41524200-41555800	Weak transcription	Aorta	Aorta
8	chr15:41524200-41563800	Weak transcription	Small Intestine	intestine
9	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:41524400-41532400	Weak transcription	Fetal Intestine Small	intestine
11	chr15:41524400-41533400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:41524400-41533600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:41524400-41533600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:41524400-41535800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:41524400-41536600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:41524400-41555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:41524600-41527800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:41524600-41533400	Weak transcription	Primary B cells from cord blood	blood
19	chr15:41524600-41533600	Weak transcription	Thymus	Thymus
20	chr15:41524600-41536400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:41524600-41536600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:41524800-41528000	Weak transcription	Gastric	stomach
23	chr15:41524800-41533000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:41524800-41533200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr15:41524800-41533400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:41524800-41533600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:41524800-41535800	Weak transcription	Ovary	ovary
28	chr15:41524800-41546200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr15:41524800-41563800	Weak transcription	Esophagus	oesophagus
30	chr15:41525000-41530600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:41525000-41533400	Weak transcription	Primary T cells from cord blood	blood
32	chr15:41525000-41533600	Weak transcription	Placenta	Placenta
33	chr15:41525000-41535400	Weak transcription	Fetal Stomach	stomach
34	chr15:41525000-41548400	Weak transcription	Fetal Lung	lung
35	chr15:41525200-41532600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:41525200-41533400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:41525200-41533400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:41525200-41533400	Weak transcription	Brain Anterior Caudate	brain
39	chr15:41525200-41533600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:41525200-41533600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:41525200-41548200	Weak transcription	Fetal Kidney	kidney
42	chr15:41525200-41554200	Weak transcription	Fetal Brain Female	brain
43	chr15:41525200-41556400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr15:41525400-41529600	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:41525400-41530200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:41525400-41532400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:41525400-41532400	Weak transcription	Fetal Intestine Large	intestine
49	chr15:41525400-41533200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr15:41525400-41533400	Weak transcription	Brain Hippocampus Middle	brain

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