Variant report

Variant	rs66723852
Chromosome Location	chr15:41558688-41558689
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41548726..41552355-chr15:41557074..41560902,3	K562	blood:

Variant related genes	Relation type
ENSG00000187446	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10152631	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070323	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11857726	0.83[ASN][1000 genomes]
rs28459903	0.81[ASN][1000 genomes]
rs28510224	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28523607	0.80[EUR][1000 genomes]
rs57126801	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58547976	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58677271	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58819307	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59926382	0.80[EUR][1000 genomes]
rs61592157	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66520648	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66663059	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66993182	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67259166	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67891871	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68180828	0.80[EUR][1000 genomes]
rs7166556	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7178739	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72739605	0.82[EUR][1000 genomes]
rs73402954	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41563800	Weak transcription	Small Intestine	intestine
2	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:41524800-41563800	Weak transcription	Esophagus	oesophagus
4	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:41536600-41573600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:41537400-41570800	Weak transcription	Ovary	ovary
8	chr15:41537600-41562800	Weak transcription	Lung	lung
9	chr15:41542800-41572000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:41543000-41575200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:41545000-41571400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:41549200-41575200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:41550400-41571400	Weak transcription	Right Ventricle	heart
14	chr15:41550400-41575600	Weak transcription	Fetal Brain Male	brain
15	chr15:41550600-41564200	Weak transcription	NHDF-Ad	bronchial
16	chr15:41551800-41568600	Weak transcription	Fetal Lung	lung
17	chr15:41551800-41570600	Weak transcription	HMEC	breast
18	chr15:41552400-41574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:41552600-41575200	Weak transcription	GM12878-XiMat	blood
20	chr15:41552800-41575800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:41553000-41560000	Strong transcription	Fetal Intestine Small	intestine
22	chr15:41553600-41569200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:41554400-41559600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:41554600-41559000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:41554600-41559000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:41554600-41559600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:41554600-41560600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:41554600-41573000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:41554800-41559000	Strong transcription	Colon Smooth Muscle	Colon
30	chr15:41554800-41559200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr15:41554800-41559600	Strong transcription	Fetal Intestine Large	intestine
32	chr15:41554800-41563400	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr15:41555000-41560200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:41555000-41561400	Strong transcription	Fetal Stomach	stomach
35	chr15:41555400-41569000	Weak transcription	Fetal Kidney	kidney
36	chr15:41555400-41570800	Weak transcription	HSMM	muscle
37	chr15:41555600-41564200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:41555600-41566600	Weak transcription	Brain Angular Gyrus	brain
39	chr15:41555600-41569000	Weak transcription	Dnd41	blood
40	chr15:41555600-41570600	Strong transcription	Liver	Liver
41	chr15:41556200-41569000	Weak transcription	K562	blood
42	chr15:41556400-41558800	Strong transcription	Hela-S3	cervix
43	chr15:41556400-41559600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:41556400-41562800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:41556400-41563800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:41556400-41571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:41556400-41574400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:41556600-41559600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:41556600-41561600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:41556600-41568400	Weak transcription	Stomach Mucosa	stomach

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