Variant report

Variant	rs28510224
Chromosome Location	chr15:41534739-41534740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41521136..41528560-chr15:41530721..41537224,13	K562	blood:

Variant related genes	Relation type
ENSG00000178997	Chromatin interaction
ENSG00000187446	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10152631	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11070323	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11857726	0.87[ASN][1000 genomes]
rs28459903	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28523607	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57126801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58330134	0.81[EUR][1000 genomes]
rs58547976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58677271	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58819307	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59926382	0.86[EUR][1000 genomes]
rs61592157	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66520648	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66663059	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66723852	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66993182	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67259166	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67891871	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68180828	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7166556	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7178739	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72739605	0.81[EUR][1000 genomes]
rs73396323	0.83[EUR][1000 genomes]
rs73402954	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv1844058	chr15:41511916-41548948	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41535800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:41524200-41536600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:41524200-41546200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:41524200-41554800	Weak transcription	Fetal Thymus	thymus
5	chr15:41524200-41555800	Weak transcription	Aorta	Aorta
6	chr15:41524200-41563800	Weak transcription	Small Intestine	intestine
7	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:41524400-41535800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:41524400-41536600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:41524400-41555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:41524600-41536400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:41524600-41536600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:41524800-41535800	Weak transcription	Ovary	ovary
14	chr15:41524800-41546200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:41524800-41563800	Weak transcription	Esophagus	oesophagus
16	chr15:41525000-41535400	Weak transcription	Fetal Stomach	stomach
17	chr15:41525000-41548400	Weak transcription	Fetal Lung	lung
18	chr15:41525200-41548200	Weak transcription	Fetal Kidney	kidney
19	chr15:41525200-41554200	Weak transcription	Fetal Brain Female	brain
20	chr15:41525200-41556400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:41525400-41536400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:41525400-41538800	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:41525400-41556200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:41525400-41556800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:41525800-41535600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:41525800-41535600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:41525800-41536600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:41525800-41554800	Weak transcription	Dnd41	blood
30	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:41526000-41541800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:41526000-41554800	Weak transcription	Brain Angular Gyrus	brain
33	chr15:41526200-41542200	Weak transcription	NH-A	brain
34	chr15:41526200-41554800	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:41526400-41542200	Weak transcription	HSMMtube	muscle
36	chr15:41528200-41535800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:41528200-41536400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:41531600-41534800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:41532000-41542000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:41532400-41550600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:41533200-41539600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:41533200-41548400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr15:41533200-41552400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:41533400-41534800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:41533400-41534800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:41533400-41537400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr15:41533600-41534800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:41533600-41534800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:41533600-41534800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:41533600-41535000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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