Variant report

Variant	rs72739605
Chromosome Location	chr15:41556395-41556396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41555011..41557594-chr15:41575964..41578255,2	K562	blood:
2	chr15:41554916..41558076-chr15:41560482..41563886,4	K562	blood:

Variant related genes	Relation type
ENSG00000247556	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17718117	0.82[EUR][1000 genomes]
rs28510224	0.81[EUR][1000 genomes]
rs58677271	0.83[EUR][1000 genomes]
rs58819307	0.81[EUR][1000 genomes]
rs66723852	0.82[EUR][1000 genomes]
rs67259166	0.84[EUR][1000 genomes]
rs67891871	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41563800	Weak transcription	Small Intestine	intestine
2	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:41524800-41563800	Weak transcription	Esophagus	oesophagus
4	chr15:41525200-41556400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:41525400-41556800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:41534200-41556400	Weak transcription	Spleen	Spleen
9	chr15:41536600-41573600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:41537400-41570800	Weak transcription	Ovary	ovary
11	chr15:41537600-41562800	Weak transcription	Lung	lung
12	chr15:41542800-41572000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:41543000-41575200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:41545000-41571400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:41549200-41575200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:41550400-41571400	Weak transcription	Right Ventricle	heart
17	chr15:41550400-41575600	Weak transcription	Fetal Brain Male	brain
18	chr15:41550600-41564200	Weak transcription	NHDF-Ad	bronchial
19	chr15:41551800-41568600	Weak transcription	Fetal Lung	lung
20	chr15:41551800-41570600	Weak transcription	HMEC	breast
21	chr15:41552400-41574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:41552600-41575200	Weak transcription	GM12878-XiMat	blood
23	chr15:41552800-41575800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:41553000-41560000	Strong transcription	Fetal Intestine Small	intestine
25	chr15:41553600-41569200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:41554200-41557200	Strong transcription	Fetal Brain Female	brain
27	chr15:41554400-41557200	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:41554400-41557600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr15:41554400-41559600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr15:41554600-41557000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:41554600-41557000	Strong transcription	Brain Hippocampus Middle	brain
32	chr15:41554600-41557200	Strong transcription	Primary T cells from cord blood	blood
33	chr15:41554600-41557200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:41554600-41557200	Strong transcription	Brain Anterior Caudate	brain
35	chr15:41554600-41557200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr15:41554600-41557400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:41554600-41557400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:41554600-41557400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:41554600-41557600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:41554600-41557600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:41554600-41557600	Strong transcription	Colonic Mucosa	Colon
42	chr15:41554600-41557600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr15:41554600-41558600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:41554600-41559000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:41554600-41559000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:41554600-41559600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:41554600-41560600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:41554600-41573000	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:41554800-41556600	Enhancers	Stomach Mucosa	stomach
50	chr15:41554800-41556600	Strong transcription	NH-A	brain

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