Variant report

Variant	rs68180828
Chromosome Location	chr15:41485697-41485698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC012652.1.1-5	chr15:41485541-41487747	predAs_engstrom06_AA043058_1

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10152631	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070323	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11857726	0.82[ASN][1000 genomes]
rs17718117	0.85[EUR][1000 genomes]
rs28459903	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28510224	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28523607	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57126801	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58330134	0.95[EUR][1000 genomes]
rs58547976	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58677271	0.84[EUR][1000 genomes]
rs58819307	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59926382	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61592157	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61648937	0.81[EUR][1000 genomes]
rs66520648	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66663059	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66723852	0.80[EUR][1000 genomes]
rs66993182	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67259166	0.86[EUR][1000 genomes]
rs67891871	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7166556	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7178739	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72737761	0.82[EUR][1000 genomes]
rs73396323	0.97[EUR][1000 genomes]
rs73402954	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1039906	chr15:41476209-41518976	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41484400-41494400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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