Variant report

Variant	rs72737761
Chromosome Location	chr15:41454394-41454395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12148862	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17718117	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523607	0.82[EUR][1000 genomes]
rs3986307	1.00[ASN][1000 genomes]
rs58330134	0.84[EUR][1000 genomes]
rs59926382	0.82[EUR][1000 genomes]
rs61592157	0.82[EUR][1000 genomes]
rs66520648	0.82[EUR][1000 genomes]
rs66663059	0.82[EUR][1000 genomes]
rs68180828	0.82[EUR][1000 genomes]
rs7182660	1.00[ASN][1000 genomes]
rs72737726	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73396323	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41452600-41454400	Enhancers	Hela-S3	cervix
2	chr15:41452600-41454800	Enhancers	Osteobl	bone
3	chr15:41452600-41455400	Enhancers	NHLF	lung
4	chr15:41453000-41454600	Enhancers	A549	lung
5	chr15:41453200-41454400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:41453200-41454400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:41453400-41454400	Weak transcription	Pancreas	Pancrea
8	chr15:41453600-41454600	Enhancers	HUVEC	blood vessel
9	chr15:41453800-41454400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:41453800-41454600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:41453800-41454600	Enhancers	NH-A	brain
12	chr15:41454000-41454800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:41454000-41454800	Enhancers	Primary hematopoietic stem cells	blood
14	chr15:41454000-41454800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:41454000-41454800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:41454000-41454800	Enhancers	Dnd41	blood
17	chr15:41454200-41454400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:41454200-41454600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:41454200-41454600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:41454200-41456200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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