Variant report

Variant	rs61658638
Chromosome Location	chr10:53679629-53679630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53279389..53281132-chr10:53678366..53680134,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56207454	1.00[AMR][1000 genomes]
rs57123180	1.00[AMR][1000 genomes]
rs58088751	1.00[AMR][1000 genomes]
rs58332265	1.00[AMR][1000 genomes]
rs59198237	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59201570	1.00[AMR][1000 genomes]
rs59431116	1.00[AMR][1000 genomes]
rs59625881	1.00[AMR][1000 genomes]
rs60607359	1.00[AMR][1000 genomes]
rs61372373	1.00[AMR][1000 genomes]
rs7086973	1.00[AMR][1000 genomes]
rs74132467	1.00[AMR][1000 genomes]
rs74132817	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132864	1.00[AMR][1000 genomes]
rs74132866	1.00[AMR][1000 genomes]
rs74132881	1.00[AMR][1000 genomes]
rs74135010	1.00[AMR][1000 genomes]
rs74135028	1.00[AMR][1000 genomes]
rs74135042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53672200-53679800	Weak transcription	Aorta	Aorta
2	chr10:53676200-53679800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:53676400-53679800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:53677800-53680000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:53677800-53680000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:53678200-53679800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:53678200-53680000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:53678200-53680000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:53678400-53680000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:53678400-53680000	Enhancers	Brain Substantia Nigra	brain
11	chr10:53678400-53680200	Enhancers	Ovary	ovary
12	chr10:53678600-53680000	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:53678600-53680400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:53678800-53679800	Enhancers	Fetal Lung	lung
15	chr10:53678800-53680000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:53678800-53680000	Enhancers	HUVEC	blood vessel
17	chr10:53679000-53680200	Enhancers	Brain Angular Gyrus	brain
18	chr10:53679000-53681800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:53679200-53682400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:53679400-53679800	Weak transcription	GM12878-XiMat	blood
21	chr10:53679400-53680400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:53679600-53680000	Enhancers	Fetal Kidney	kidney

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