Variant report

Variant	rs59201570
Chromosome Location	chr10:53799627-53799628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10458658	1.00[AMR][1000 genomes]
rs10762572	1.00[AMR][1000 genomes]
rs11818367	1.00[AMR][1000 genomes]
rs16927140	1.00[AMR][1000 genomes]
rs3851090	1.00[AMR][1000 genomes]
rs56207454	1.00[AMR][1000 genomes]
rs57123180	1.00[AMR][1000 genomes]
rs58088751	1.00[AMR][1000 genomes]
rs58332265	1.00[AMR][1000 genomes]
rs59198237	1.00[AMR][1000 genomes]
rs59431116	1.00[AMR][1000 genomes]
rs59625881	1.00[AMR][1000 genomes]
rs60607359	1.00[AMR][1000 genomes]
rs61372373	1.00[AMR][1000 genomes]
rs61658638	1.00[AMR][1000 genomes]
rs7086973	1.00[AMR][1000 genomes]
rs74132817	1.00[AMR][1000 genomes]
rs74132864	1.00[AMR][1000 genomes]
rs74132866	1.00[AMR][1000 genomes]
rs74132881	1.00[AMR][1000 genomes]
rs74135010	1.00[AMR][1000 genomes]
rs74135028	1.00[AMR][1000 genomes]
rs74135042	1.00[AMR][1000 genomes]
rs74135043	1.00[AMR][1000 genomes]
rs74135048	1.00[AMR][1000 genomes]
rs74135049	1.00[AMR][1000 genomes]
rs7919897	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1040754	chr10:53758289-53845925	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53794600-53799800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:53795200-53800000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:53796000-53801400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr10:53798000-53799800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr10:53798400-53800800	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:53798400-53801000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:53799400-53799800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:53799400-53800000	Enhancers	Fetal Lung	lung
9	chr10:53799400-53800200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr10:53799400-53800200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr10:53799400-53800200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:53799400-53800200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:53799400-53800200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr10:53799400-53801600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr10:53799600-53800200	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:53799600-53804600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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