Variant report

Variant	rs74135042
Chromosome Location	chr10:53678013-53678014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56207454	1.00[AMR][1000 genomes]
rs57123180	1.00[AMR][1000 genomes]
rs58088751	1.00[AMR][1000 genomes]
rs58332265	1.00[AMR][1000 genomes]
rs59198237	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59201570	1.00[AMR][1000 genomes]
rs59431116	1.00[AMR][1000 genomes]
rs59625881	1.00[AMR][1000 genomes]
rs60607359	1.00[AMR][1000 genomes]
rs61372373	1.00[AMR][1000 genomes]
rs61658638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086973	1.00[AMR][1000 genomes]
rs74132467	1.00[AMR][1000 genomes]
rs74132817	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132864	1.00[AMR][1000 genomes]
rs74132866	1.00[AMR][1000 genomes]
rs74132881	1.00[AMR][1000 genomes]
rs74135010	1.00[AMR][1000 genomes]
rs74135028	1.00[AMR][1000 genomes]
rs74135043	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53667600-53678800	Weak transcription	Fetal Lung	lung
2	chr10:53672200-53678400	Weak transcription	Ovary	ovary
3	chr10:53672200-53679800	Weak transcription	Aorta	Aorta
4	chr10:53673000-53678400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:53675000-53678400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:53675000-53678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:53675200-53678200	Weak transcription	NHDF-Ad	bronchial
8	chr10:53675200-53678400	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:53675400-53678200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:53675400-53678200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:53675400-53678400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:53675400-53678600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:53676000-53678200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:53676000-53678200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:53676200-53678200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:53676200-53678400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:53676200-53678800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:53676200-53679800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:53676400-53678200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:53676400-53678200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:53676400-53679800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:53677600-53678200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:53677600-53678400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:53677800-53678400	Enhancers	HUVEC	blood vessel
25	chr10:53677800-53680000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:53677800-53680000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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