Variant report

Variant	rs3851090
Chromosome Location	chr10:53870660-53870661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10047324	1.00[EUR][1000 genomes]
rs10458658	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10762572	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11000371	1.00[EUR][1000 genomes]
rs11000393	1.00[EUR][1000 genomes]
rs11000394	1.00[EUR][1000 genomes]
rs11000397	1.00[EUR][1000 genomes]
rs11000398	1.00[EUR][1000 genomes]
rs11001528	1.00[TSI][hapmap]
rs11001529	1.00[TSI][hapmap]
rs11818367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240845	1.00[EUR][1000 genomes]
rs12242283	1.00[EUR][1000 genomes]
rs12248180	1.00[EUR][1000 genomes]
rs12258867	1.00[EUR][1000 genomes]
rs12265278	1.00[EUR][1000 genomes]
rs12269319	1.00[EUR][1000 genomes]
rs12269498	1.00[EUR][1000 genomes]
rs13376777	1.00[EUR][1000 genomes]
rs16927140	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57123180	1.00[AMR][1000 genomes]
rs58088751	1.00[AMR][1000 genomes]
rs58332265	1.00[AMR][1000 genomes]
rs59201570	1.00[AMR][1000 genomes]
rs59625881	1.00[AMR][1000 genomes]
rs60607359	1.00[AMR][1000 genomes]
rs7086973	1.00[AMR][1000 genomes]
rs73339250	1.00[EUR][1000 genomes]
rs74132864	1.00[AMR][1000 genomes]
rs74132866	1.00[AMR][1000 genomes]
rs74132881	1.00[AMR][1000 genomes]
rs7919897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv467198	chr10:53843374-53923411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv550875	chr10:53843374-53923411	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv467199	chr10:53864402-53948854	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv550876	chr10:53864402-53948854	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53867000-53872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:53870000-53875200	Weak transcription	Psoas Muscle	Psoas
3	chr10:53870200-53870800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr10:53870200-53872000	Enhancers	Fetal Lung	lung
5	chr10:53870400-53870800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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