Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10458658	1.00[EUR][1000 genomes]
rs10762572	1.00[EUR][1000 genomes]
rs11000270	1.00[AMR][1000 genomes]
rs11000371	1.00[EUR][1000 genomes]
rs11000393	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11000394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11000397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11000398	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818367	1.00[EUR][1000 genomes]
rs12240845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248180	1.00[EUR][1000 genomes]
rs12255097	1.00[AMR][1000 genomes]
rs12255212	1.00[AMR][1000 genomes]
rs12258867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262440	1.00[AMR][1000 genomes]
rs12265278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13376777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16927140	1.00[EUR][1000 genomes]
rs3851090	1.00[EUR][1000 genomes]
rs58806231	1.00[EUR][1000 genomes]
rs73339250	1.00[EUR][1000 genomes]
rs7919897	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53733000-53752000	Weak transcription	Psoas Muscle	Psoas
2	chr10:53743600-53746400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:53745600-53746400	Enhancers	HSMMtube	muscle
4	chr10:53745600-53746600	Enhancers	Aorta	Aorta
5	chr10:53745600-53746600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr10:53745800-53746200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:53745800-53746400	Weak transcription	Pancreas	Pancrea

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