Variant report

Variant	rs11000371
Chromosome Location	chr10:53741934-53741935
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047324	1.00[EUR][1000 genomes]
rs10458658	1.00[EUR][1000 genomes]
rs10762572	1.00[EUR][1000 genomes]
rs11000393	1.00[EUR][1000 genomes]
rs11000394	1.00[EUR][1000 genomes]
rs11000397	1.00[EUR][1000 genomes]
rs11000398	1.00[EUR][1000 genomes]
rs11818367	1.00[EUR][1000 genomes]
rs12240845	1.00[EUR][1000 genomes]
rs12242283	1.00[EUR][1000 genomes]
rs12248180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258867	1.00[EUR][1000 genomes]
rs12265278	1.00[EUR][1000 genomes]
rs12269319	1.00[EUR][1000 genomes]
rs12269498	1.00[EUR][1000 genomes]
rs13376777	1.00[EUR][1000 genomes]
rs16927140	1.00[EUR][1000 genomes]
rs3851090	1.00[EUR][1000 genomes]
rs58806231	1.00[EUR][1000 genomes]
rs73339250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919897	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv519743	chr10:53721665-53773912	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2750961	chr10:53726294-54010594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
2	chr10:53733000-53752000	Weak transcription	Psoas Muscle	Psoas
3	chr10:53741400-53742800	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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