Variant report

Variant	rs58806231
Chromosome Location	chr10:53673785-53673786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10047324	1.00[EUR][1000 genomes]
rs11000371	1.00[EUR][1000 genomes]
rs11000393	1.00[EUR][1000 genomes]
rs11000394	1.00[EUR][1000 genomes]
rs11000397	1.00[EUR][1000 genomes]
rs11000398	1.00[EUR][1000 genomes]
rs12240845	1.00[EUR][1000 genomes]
rs12242283	1.00[EUR][1000 genomes]
rs12248180	1.00[EUR][1000 genomes]
rs12258867	1.00[EUR][1000 genomes]
rs12265278	1.00[EUR][1000 genomes]
rs12269319	1.00[EUR][1000 genomes]
rs12269498	1.00[EUR][1000 genomes]
rs13376777	1.00[EUR][1000 genomes]
rs73339250	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53667400-53674800	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:53667600-53678800	Weak transcription	Fetal Lung	lung
3	chr10:53670600-53674400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:53670600-53674800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:53670600-53674800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:53670800-53674400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:53670800-53674800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:53672200-53674600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:53672200-53674800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:53672200-53677600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:53672200-53677600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:53672200-53678400	Weak transcription	Ovary	ovary
13	chr10:53672200-53679800	Weak transcription	Aorta	Aorta
14	chr10:53673000-53673800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr10:53673000-53678400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:53673200-53673800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:53673200-53675000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:53673200-53676400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:53673600-53674000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links