Variant report
| Variant | rs12240845 |
|---|---|
| Chromosome Location | chr10:53757908-53757909 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:53752870..53755401-chr10:53757824..53760808,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10047324 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10458658 | 1.00[EUR][1000 genomes] |
| rs10762572 | 1.00[EUR][1000 genomes] |
| rs11000270 | 1.00[AMR][1000 genomes] |
| rs11000371 | 1.00[EUR][1000 genomes] |
| rs11000393 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11000394 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11000397 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11000398 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11818367 | 1.00[EUR][1000 genomes] |
| rs12242283 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12248180 | 1.00[EUR][1000 genomes] |
| rs12255097 | 1.00[AMR][1000 genomes] |
| rs12255212 | 1.00[AMR][1000 genomes] |
| rs12258867 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12262440 | 1.00[AMR][1000 genomes] |
| rs12265278 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12269319 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12269498 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13376777 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16927140 | 1.00[EUR][1000 genomes] |
| rs3851090 | 1.00[EUR][1000 genomes] |
| rs58806231 | 1.00[EUR][1000 genomes] |
| rs73339250 | 1.00[EUR][1000 genomes] |
| rs7919897 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045692 | chr10:53301450-54086823 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv519743 | chr10:53721665-53773912 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv2750961 | chr10:53726294-54010594 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv532194 | chr10:53746620-54735550 | Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:53746600-53758800 | Weak transcription | Aorta | Aorta |
| 2 | chr10:53752600-53766800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
