Variant report

Variant	rs61693896
Chromosome Location	chr6:2309036-2309037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046434	0.82[ASN][1000 genomes]
rs12175387	0.81[EUR][1000 genomes]
rs12193414	0.98[ASN][1000 genomes]
rs12193650	0.92[ASN][1000 genomes]
rs13207508	0.81[EUR][1000 genomes]
rs17134937	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1887419	0.82[ASN][1000 genomes]
rs2104592	1.00[ASN][1000 genomes]
rs2295007	0.81[EUR][1000 genomes]
rs35888609	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57974028	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59711442	0.87[ASN][1000 genomes]
rs60259303	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61245983	0.82[ASN][1000 genomes]
rs61372774	0.84[EUR][1000 genomes]
rs6899468	1.00[ASN][1000 genomes]
rs6903122	0.91[ASN][1000 genomes]
rs6916208	1.00[ASN][1000 genomes]
rs6936023	1.00[ASN][1000 genomes]
rs72830193	0.82[ASN][1000 genomes]
rs7755421	1.00[ASN][1000 genomes]
rs7767356	1.00[ASN][1000 genomes]
rs9501822	0.93[ASN][1000 genomes]
rs9503146	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
5	nsv1022166	chr6:2199666-2320800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1017174	chr6:2213893-2340529	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	esv2763526	chr6:2230064-2311916	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
9	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
10	nsv883390	chr6:2265344-2584919	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
11	nsv883391	chr6:2282747-2507448	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2275400-2319400	Weak transcription	Gastric	stomach
2	chr6:2298400-2320400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:2299000-2319600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:2299200-2324200	Weak transcription	Aorta	Aorta
5	chr6:2299800-2316800	Weak transcription	Left Ventricle	heart
6	chr6:2306000-2316800	Weak transcription	Fetal Stomach	stomach
7	chr6:2306400-2314600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:2306600-2309800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:2306600-2313400	Weak transcription	Ovary	ovary
10	chr6:2307800-2310600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:2308200-2309800	Enhancers	Fetal Intestine Small	intestine
12	chr6:2308600-2309400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:2308800-2310000	Weak transcription	Small Intestine	intestine
14	chr6:2308800-2311200	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:2308800-2319600	Weak transcription	Pancreas	Pancrea

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