Variant report

Variant	rs61732445
Chromosome Location	chr3:141164761-141164762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr3:141164554-141164835	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr3:141164640-141164771	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr3:141163702-141164793	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141087300..141088860-chr3:141163731..141166703,2	K562	blood:

Variant related genes	Relation type
ZBTB38	TF binding region
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60131538	1.00[AMR][1000 genomes]
rs61732446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869560	1.00[AMR][1000 genomes]
rs73869562	1.00[AMR][1000 genomes]
rs7623724	1.00[AMR][1000 genomes]
rs7624021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv819098	chr3:141164361-141165148	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
3	chr3:141156400-141166600	Strong transcription	Fetal Intestine Large	intestine
4	chr3:141159600-141165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:141160400-141165200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:141160400-141166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:141160400-141166600	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:141160400-141166800	Strong transcription	A549	lung
9	chr3:141160400-141167400	Strong transcription	HSMM	muscle
10	chr3:141160400-141169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:141160600-141166600	Strong transcription	HepG2	liver
13	chr3:141160600-141166800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr3:141160800-141166600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:141161000-141165000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:141161000-141165200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:141161000-141165800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:141161000-141166800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr3:141161000-141166800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr3:141161200-141164800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr3:141161200-141164800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:141161200-141165000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:141161200-141165800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:141161200-141166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:141161200-141166400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:141161200-141166600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:141161200-141166600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:141161200-141166600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr3:141161200-141166600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:141161200-141166800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:141161200-141166800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:141161200-141166800	Strong transcription	Adipose Nuclei	Adipose
33	chr3:141161200-141166800	Strong transcription	Liver	Liver
34	chr3:141161200-141166800	Strong transcription	Fetal Brain Female	brain
35	chr3:141161200-141166800	Strong transcription	GM12878-XiMat	blood
36	chr3:141161200-141167400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr3:141161200-141169000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:141161400-141164800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:141161400-141164800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:141161400-141166600	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr3:141161400-141166600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:141161400-141166600	Strong transcription	HSMMtube	muscle
43	chr3:141161400-141166800	Strong transcription	HUVEC	blood vessel
44	chr3:141161400-141166800	Strong transcription	NHEK	skin
45	chr3:141161400-141167000	Genic enhancers	NHLF	lung
46	chr3:141161600-141164800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:141161600-141165000	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr3:141161600-141166800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr3:141161600-141166800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:141161600-141166800	Strong transcription	HMEC	breast

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