Variant report

Variant	rs73869560
Chromosome Location	chr3:140998899-140998900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:140948408..140951597-chr3:140996026..140999585,4	MCF-7	breast:
2	chr3:140998105..140999651-chr3:141029649..141032061,2	K562	blood:
3	chr3:140998144..141000121-chr3:141003394..141004994,2	K562	blood:
4	chr3:140945385..140947466-chr3:140997029..140999166,2	MCF-7	breast:
5	chr3:140994584..140997206-chr3:140998045..141000417,2	K562	blood:
6	chr3:140996819..140999221-chr3:141004642..141007259,2	MCF-7	breast:
7	chr3:140997890..141000660-chr3:141000973..141003203,2	K562	blood:
8	chr3:140992520..140994223-chr3:140997053..141000025,2	K562	blood:
9	chr3:140998151..140999834-chr3:141030561..141032150,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60131538	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732445	1.00[AMR][1000 genomes]
rs61732446	1.00[AMR][1000 genomes]
rs6650894	1.00[AMR][1000 genomes]
rs6764400	1.00[AMR][1000 genomes]
rs6764863	1.00[AMR][1000 genomes]
rs73869562	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869568	0.90[AFR][1000 genomes]
rs7623724	1.00[AMR][1000 genomes]
rs7624021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
3	chr3:140979000-141000800	Weak transcription	Fetal Kidney	kidney
4	chr3:140979000-141013200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:140980800-141005600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:140981200-141013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:140981200-141013400	Weak transcription	Colonic Mucosa	Colon
8	chr3:140981400-141001000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
10	chr3:140984200-141000800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:140984800-141006400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:140986200-141000800	Weak transcription	Fetal Lung	lung
13	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:140988400-141001800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:140991000-140999600	Weak transcription	Pancreas	Pancrea
16	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:140993600-141004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:140993800-140999600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:140994000-141006000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:140994200-140999400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:140994400-141000200	Weak transcription	Ovary	ovary
22	chr3:140994400-141005600	Weak transcription	GM12878-XiMat	blood
23	chr3:140994400-141009000	Strong transcription	Dnd41	blood
24	chr3:140994600-141006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:140994600-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:140994600-141013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:140995200-141007000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr3:140995400-141009000	Weak transcription	HepG2	liver
29	chr3:140996000-141012400	Strong transcription	Thymus	Thymus
30	chr3:140996200-141012400	Strong transcription	Primary T cells from cord blood	blood
31	chr3:140996400-140999600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:140996400-141000400	Enhancers	Fetal Heart	heart
33	chr3:140996400-141004600	Strong transcription	Fetal Intestine Small	intestine
34	chr3:140996400-141012800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr3:140996600-141002000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:140996800-140999800	Strong transcription	Fetal Intestine Large	intestine
37	chr3:140997200-140999400	Genic enhancers	Fetal Muscle Trunk	muscle
38	chr3:140997200-141006200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:140997200-141013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:140997400-140999000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:140997400-140999400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:140997400-140999400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:140997400-140999800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:140997600-140999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:140997600-140999600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:140997600-140999600	Enhancers	Adipose Nuclei	Adipose
47	chr3:140997600-140999600	Genic enhancers	Fetal Muscle Leg	muscle
48	chr3:140997600-140999800	Enhancers	Osteobl	bone
49	chr3:140997600-141000000	Enhancers	Muscle Satellite Cultured Cells	--
50	chr3:140997800-140999000	Enhancers	Brain Substantia Nigra	brain

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