Variant report

Variant	rs73869562
Chromosome Location	chr3:141001084-141001085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140997890..141000660-chr3:141000973..141003203,2	K562	blood:
2	chr3:141000930..141002501-chr3:141293837..141295898,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60131538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732445	1.00[AMR][1000 genomes]
rs61732446	1.00[AMR][1000 genomes]
rs6650894	1.00[AMR][1000 genomes]
rs6764400	1.00[AMR][1000 genomes]
rs6764863	1.00[AMR][1000 genomes]
rs73869560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623724	1.00[AMR][1000 genomes]
rs7624021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
2	chr3:140979000-141013200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:140980800-141005600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:140981200-141013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:140981200-141013400	Weak transcription	Colonic Mucosa	Colon
6	chr3:140983600-141021600	Weak transcription	Esophagus	oesophagus
7	chr3:140984800-141006400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:140988200-141022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:140988400-141001800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:140993200-141014200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:140993600-141004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:140994000-141006000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:140994400-141005600	Weak transcription	GM12878-XiMat	blood
14	chr3:140994400-141009000	Strong transcription	Dnd41	blood
15	chr3:140994600-141006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:140994600-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:140994600-141013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:140995200-141007000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:140995400-141009000	Weak transcription	HepG2	liver
20	chr3:140996000-141012400	Strong transcription	Thymus	Thymus
21	chr3:140996200-141012400	Strong transcription	Primary T cells from cord blood	blood
22	chr3:140996400-141004600	Strong transcription	Fetal Intestine Small	intestine
23	chr3:140996400-141012800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:140996600-141002000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:140997200-141006200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:140997200-141013800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:140998000-141001600	Strong transcription	Fetal Brain Female	brain
28	chr3:140998000-141012800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:140998200-141001200	Strong transcription	Right Ventricle	heart
30	chr3:140998200-141005600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:140998200-141005800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:140998200-141005800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:140998200-141006200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:140998200-141006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:140998200-141010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr3:140998200-141010600	Weak transcription	Psoas Muscle	Psoas
37	chr3:140998200-141012400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr3:140998200-141013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr3:140998400-141001200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:140998400-141002400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr3:140998400-141006600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr3:140998400-141010400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:140998400-141011400	Weak transcription	Liver	Liver
44	chr3:140998600-141001200	Strong transcription	Gastric	stomach
45	chr3:140998600-141001400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr3:140998600-141001800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr3:140998600-141001800	Strong transcription	Brain Germinal Matrix	brain
48	chr3:140998600-141004400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:140998600-141012400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:140998600-141013800	Weak transcription	Fetal Brain Male	brain

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