Variant report

Variant	rs61733810
Chromosome Location	chr14:70722482-70722483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70519745..70521992-chr14:70721079..70723653,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12590427	1.00[AFR][1000 genomes]
rs34937979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57195006	1.00[AMR][1000 genomes]
rs57233679	1.00[AMR][1000 genomes]
rs57642196	1.00[AMR][1000 genomes]
rs60130870	1.00[AMR][1000 genomes]
rs73278853	1.00[AMR][1000 genomes]
rs73278891	1.00[AMR][1000 genomes]
rs73278895	1.00[AMR][1000 genomes]
rs73280734	1.00[AFR][1000 genomes]
rs73280744	1.00[AFR][1000 genomes]
rs73280764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280774	1.00[AMR][1000 genomes]
rs8012417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721000-70722600	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr14:70721000-70722800	Active TSS	H1 Cell Line	embryonic stem cell
3	chr14:70721000-70722800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
4	chr14:70721000-70724000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr14:70721200-70722600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr14:70721200-70722600	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr14:70721200-70722600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:70721200-70722800	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr14:70721200-70722800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr14:70721400-70722600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
11	chr14:70721400-70722600	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:70721400-70722600	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:70721400-70722600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:70721600-70722600	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
15	chr14:70721600-70722800	Bivalent/Poised TSS	Primary T helper cells PMA-I stimulated	--
16	chr14:70721600-70724400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:70721600-70726600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:70722000-70722600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
19	chr14:70722000-70722600	Bivalent/Poised TSS	Adipose Nuclei	Adipose
20	chr14:70722000-70722600	Active TSS	Rectal Smooth Muscle	rectum
21	chr14:70722000-70722800	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
22	chr14:70722000-70724400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:70722200-70722600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr14:70722200-70722800	Enhancers	Pancreas	Pancrea
25	chr14:70722200-70726000	Weak transcription	HepG2	liver
26	chr14:70722400-70722600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:70722400-70722600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:70722400-70722600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:70722400-70722600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:70722400-70722600	Enhancers	Gastric	stomach
31	chr14:70722400-70722800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
32	chr14:70722400-70722800	Bivalent/Poised TSS	Primary T helper naive cells from peripheral blood	blood

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