Variant report

Variant	rs73280764
Chromosome Location	chr14:70724411-70724412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70514161..70515859-chr14:70723794..70725987,2	MCF-7	breast:
2	chr14:70512590..70513297-chr14:70723854..70724631,4	MCF-7	breast:
3	chr14:70553438..70554419-chr14:70723857..70725057,7	MCF-7	breast:
4	chr14:70563314..70564224-chr14:70724024..70724835,3	MCF-7	breast:
5	chr14:70717254..70719398-chr14:70724325..70725965,2	MCF-7	breast:
6	chr14:70563059..70563930-chr14:70724005..70724836,3	MCF-7	breast:
7	chr14:70192465..70194929-chr14:70723600..70725967,2	MCF-7	breast:
8	chr14:70285530..70286121-chr14:70724141..70724832,2	MCF-7	breast:
9	chr14:70512608..70513510-chr14:70723957..70724907,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12590427	1.00[AFR][1000 genomes]
rs34937979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57195006	1.00[AMR][1000 genomes]
rs57233679	1.00[AMR][1000 genomes]
rs57642196	1.00[AMR][1000 genomes]
rs60130870	1.00[AMR][1000 genomes]
rs61733810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278853	1.00[AMR][1000 genomes]
rs73278891	1.00[AMR][1000 genomes]
rs73278895	1.00[AMR][1000 genomes]
rs73280734	1.00[AFR][1000 genomes]
rs73280744	1.00[AFR][1000 genomes]
rs73280774	1.00[AMR][1000 genomes]
rs8012417	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv826972	chr14:70717268-70726035	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70721600-70726600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:70722200-70726000	Weak transcription	HepG2	liver
3	chr14:70723600-70724600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:70723800-70725000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:70723800-70744200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:70724000-70725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:70724400-70724600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr14:70724400-70724800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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