Variant report

Variant	rs61747118
Chromosome Location	chr14:64580075-64580076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs34944385	1.00[EUR][1000 genomes]
rs36021513	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984142	1.00[EUR][1000 genomes]
rs61984145	1.00[EUR][1000 genomes]
rs61984147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61984148	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984151	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984372	1.00[EUR][1000 genomes]
rs61984373	1.00[EUR][1000 genomes]
rs61987276	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987277	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987278	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987279	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987281	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987282	1.00[EUR][1000 genomes]
rs61987283	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987284	1.00[EUR][1000 genomes]
rs61987285	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987287	1.00[EUR][1000 genomes]
rs61987288	1.00[EUR][1000 genomes]
rs61987291	1.00[EUR][1000 genomes]
rs61987292	1.00[EUR][1000 genomes]
rs61987294	1.00[EUR][1000 genomes]
rs61987295	1.00[EUR][1000 genomes]
rs61987297	1.00[EUR][1000 genomes]
rs61987298	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:64519400-64592000	Weak transcription	Fetal Brain Male	brain
3	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr14:64548400-64590800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:64557200-64581200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:64558600-64581600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:64561600-64582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:64562800-64580200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:64562800-64596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:64565600-64581200	Weak transcription	Colonic Mucosa	Colon
11	chr14:64565800-64588600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:64567800-64584800	Weak transcription	Fetal Heart	heart
15	chr14:64568200-64582800	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr14:64568400-64582200	Strong transcription	Dnd41	blood
17	chr14:64568800-64590000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:64569000-64580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:64569000-64587800	Weak transcription	Small Intestine	intestine
20	chr14:64570600-64581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:64570600-64581600	Weak transcription	Gastric	stomach
22	chr14:64570800-64587600	Weak transcription	Primary B cells from cord blood	blood
23	chr14:64572200-64582200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:64572400-64581200	Weak transcription	Fetal Thymus	thymus
25	chr14:64572800-64586000	Weak transcription	Fetal Lung	lung
26	chr14:64574400-64580200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:64574600-64584200	Weak transcription	HUVEC	blood vessel
28	chr14:64574600-64591800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:64574800-64586000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr14:64574800-64586200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr14:64575000-64584600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr14:64575200-64581200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:64575800-64580200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:64575800-64585600	Weak transcription	Ovary	ovary
35	chr14:64576000-64580800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:64577200-64582800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:64577600-64580800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:64577800-64582600	Weak transcription	NHLF	lung
39	chr14:64577800-64583800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:64577800-64583800	Weak transcription	HMEC	breast
41	chr14:64577800-64616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:64578000-64580800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:64578000-64580800	Weak transcription	NHDF-Ad	bronchial
44	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:64578800-64580200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr14:64578800-64580200	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr14:64578800-64581000	Active TSS	Duodenum Mucosa	Duodenum
49	chr14:64579200-64580200	Enhancers	Stomach Mucosa	stomach
50	chr14:64579200-64580600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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