Variant report

Variant	rs61987297
Chromosome Location	chr14:64639899-64639900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1255980	0.83[AFR][1000 genomes]
rs1255981	0.83[AFR][1000 genomes]
rs1255982	0.83[AFR][1000 genomes]
rs1255983	0.83[AFR][1000 genomes]
rs1255985	0.83[AFR][1000 genomes]
rs34944385	1.00[EUR][1000 genomes]
rs36021513	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747118	1.00[EUR][1000 genomes]
rs61984142	1.00[EUR][1000 genomes]
rs61984145	1.00[EUR][1000 genomes]
rs61984148	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984151	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984373	1.00[EUR][1000 genomes]
rs61987276	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987277	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987278	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987279	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987281	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987282	1.00[EUR][1000 genomes]
rs61987283	1.00[EUR][1000 genomes]
rs61987284	1.00[EUR][1000 genomes]
rs61987285	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987292	1.00[EUR][1000 genomes]
rs61987294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:64591000-64649000	Strong transcription	Liver	Liver
8	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
11	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:64612600-64640000	Strong transcription	Dnd41	blood
15	chr14:64612800-64640000	Strong transcription	Primary T cells from cord blood	blood
16	chr14:64614800-64644400	Weak transcription	HSMM	muscle
17	chr14:64617600-64649000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:64617800-64649000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr14:64620000-64651200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:64620400-64653000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:64624200-64640400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:64624800-64645800	Strong transcription	Fetal Intestine Large	intestine
23	chr14:64625000-64649000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:64625000-64658000	Weak transcription	HUVEC	blood vessel
25	chr14:64625400-64640800	Strong transcription	Fetal Stomach	stomach
26	chr14:64627200-64660400	Weak transcription	Fetal Heart	heart
27	chr14:64627400-64646400	Weak transcription	Brain Anterior Caudate	brain
28	chr14:64627800-64641000	Strong transcription	Fetal Intestine Small	intestine
29	chr14:64628000-64640000	Strong transcription	Left Ventricle	heart
30	chr14:64628200-64640200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:64628200-64649000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr14:64628600-64640200	Strong transcription	Adipose Nuclei	Adipose
33	chr14:64628600-64648800	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:64628800-64640000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:64628800-64640000	Strong transcription	Thymus	Thymus
36	chr14:64628800-64640200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr14:64631400-64640200	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:64632200-64640800	Strong transcription	Colonic Mucosa	Colon
39	chr14:64633600-64640200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:64633600-64640200	Strong transcription	Brain Germinal Matrix	brain
41	chr14:64633800-64640200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:64634000-64640200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:64634600-64640200	Strong transcription	Fetal Lung	lung
44	chr14:64634600-64648800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:64635400-64640000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr14:64635400-64640200	Strong transcription	Aorta	Aorta
47	chr14:64635400-64642000	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:64635600-64640200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:64635600-64647000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr14:64636000-64645000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links