Variant report

Variant	rs61987285
Chromosome Location	chr14:64613554-64613555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64611735..64614161-chr14:64762430..64763965,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1255980	0.83[AFR][1000 genomes]
rs1255981	0.83[AFR][1000 genomes]
rs1255982	0.83[AFR][1000 genomes]
rs1255983	0.83[AFR][1000 genomes]
rs1255985	0.83[AFR][1000 genomes]
rs34944385	1.00[EUR][1000 genomes]
rs36021513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747118	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984142	1.00[EUR][1000 genomes]
rs61984145	1.00[EUR][1000 genomes]
rs61984147	0.85[AMR][1000 genomes]
rs61984148	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984151	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984372	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61984373	1.00[EUR][1000 genomes]
rs61987276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987277	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987278	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987282	1.00[EUR][1000 genomes]
rs61987283	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987284	1.00[EUR][1000 genomes]
rs61987287	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987288	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987291	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987292	1.00[EUR][1000 genomes]
rs61987294	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987295	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987297	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61987298	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64544000-64616200	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr14:64567200-64616200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:64577800-64616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
10	chr14:64584400-64616000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:64584600-64623000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:64585600-64615600	Strong transcription	Duodenum Mucosa	Duodenum
13	chr14:64585800-64614400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:64586400-64631800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:64586600-64614000	Weak transcription	Fetal Heart	heart
17	chr14:64590200-64634000	Weak transcription	HepG2	liver
18	chr14:64591000-64649000	Strong transcription	Liver	Liver
19	chr14:64593600-64615800	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:64594800-64619600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:64597000-64626400	Weak transcription	Psoas Muscle	Psoas
24	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
25	chr14:64602200-64614200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:64603600-64614400	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:64603600-64616400	Strong transcription	Fetal Intestine Large	intestine
28	chr14:64606200-64627200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr14:64606400-64613600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:64606600-64623000	Strong transcription	Thymus	Thymus
32	chr14:64608200-64614400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:64608200-64615000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:64608400-64615800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:64608400-64616000	Strong transcription	Colonic Mucosa	Colon
36	chr14:64608600-64613600	Strong transcription	Lung	lung
37	chr14:64608800-64623200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:64609000-64615800	Strong transcription	Fetal Intestine Small	intestine
39	chr14:64609800-64619600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr14:64609800-64633200	Weak transcription	Small Intestine	intestine
41	chr14:64609800-64636600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:64610400-64613600	Weak transcription	NHEK	skin
44	chr14:64610400-64619400	Weak transcription	Fetal Thymus	thymus
45	chr14:64610600-64619400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:64610600-64619600	Weak transcription	HMEC	breast
47	chr14:64610600-64622200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr14:64610600-64625400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr14:64611000-64619400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links