Variant report

Variant	rs61772606
Chromosome Location	chr1:95406899-95406900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11165277	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11540278	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133685	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135290	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136073	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137144	0.86[AFR][1000 genomes]
rs61772605	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs747188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:95395600-95407000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
5	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
6	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:95395800-95408600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:95396000-95407800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:95399400-95412200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:95399400-95412400	Weak transcription	Fetal Stomach	stomach
11	chr1:95399400-95415400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:95399400-95418800	Weak transcription	Ovary	ovary
13	chr1:95402400-95419400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:95402600-95412400	Weak transcription	Stomach Mucosa	stomach
15	chr1:95402600-95412600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:95402800-95407600	Weak transcription	HepG2	liver
17	chr1:95402800-95412200	Weak transcription	Fetal Heart	heart
18	chr1:95402800-95415400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:95403000-95408600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:95404000-95407200	Weak transcription	Liver	Liver
21	chr1:95404200-95407400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:95404200-95407800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:95404200-95410200	Weak transcription	Gastric	stomach
24	chr1:95404200-95412200	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:95404200-95412400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:95404200-95412400	Weak transcription	Right Atrium	heart
27	chr1:95404200-95412400	Weak transcription	HSMMtube	muscle
28	chr1:95404200-95421400	Weak transcription	Aorta	Aorta
29	chr1:95404400-95411200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr1:95404400-95415200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr1:95405000-95412200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:95405000-95415600	Weak transcription	NH-A	brain
33	chr1:95405200-95407600	Weak transcription	A549	lung
34	chr1:95405200-95407800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:95405200-95412400	Weak transcription	Left Ventricle	heart
36	chr1:95406000-95409400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr1:95406000-95419400	Weak transcription	Fetal Kidney	kidney
38	chr1:95406600-95412400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:95406600-95412400	Weak transcription	HSMM	muscle

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