The 2.0 version of rSNPBase

Variant report

Variant rs61775871
Chromosome Location chr1:10278228-10278229
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10272600-10284000 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr1:10272600-10284000 Weak transcription Fetal Intestine Small intestine
3 chr1:10272600-10368200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:10272800-10284000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:10272800-10284400 Weak transcription Gastric stomach
6 chr1:10272800-10290000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:10272800-10296600 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:10274000-10282400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:10274000-10285200 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr1:10274200-10284600 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:10274600-10281200 Weak transcription Fetal Muscle Trunk muscle
12 chr1:10275400-10278600 Enhancers Psoas Muscle Psoas
13 chr1:10275600-10278400 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:10275600-10278400 Enhancers Breast Myoepithelial Primary Cells Breast
15 chr1:10275600-10278600 Enhancers Fetal Heart heart
16 chr1:10275600-10278800 Enhancers Left Ventricle heart
17 chr1:10275600-10279000 Enhancers Liver Liver
18 chr1:10275800-10278400 Enhancers HUVEC blood vessel
19 chr1:10275800-10278800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:10275800-10278800 Enhancers Rectal Smooth Muscle rectum
21 chr1:10276000-10278600 Enhancers Fetal Adrenal Gland Adrenal Gland
22 chr1:10276000-10278600 Enhancers Fetal Brain Male brain
23 chr1:10276200-10278400 Enhancers Right Ventricle heart
24 chr1:10276200-10278400 Enhancers NH-A brain
25 chr1:10276200-10278800 Enhancers Right Atrium heart
26 chr1:10276200-10278800 Enhancers NHDF-Ad bronchial
27 chr1:10276200-10279000 Enhancers Osteobl bone
28 chr1:10276400-10278800 Enhancers Brain Angular Gyrus brain
29 chr1:10276400-10278800 Enhancers Fetal Muscle Leg muscle
30 chr1:10276600-10278400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:10276600-10278400 Enhancers Lung lung
32 chr1:10276600-10278800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:10276600-10281800 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr1:10276800-10279000 Enhancers Brain Anterior Caudate brain
35 chr1:10276800-10279200 Enhancers Brain Inferior Temporal Lobe brain
36 chr1:10276800-10279800 Enhancers Brain Cingulate Gyrus brain
37 chr1:10276800-10280000 Enhancers Brain Substantia Nigra brain
38 chr1:10276800-10311800 Weak transcription Hela-S3 cervix
39 chr1:10277000-10278600 Enhancers Stomach Smooth Muscle stomach
40 chr1:10277000-10279800 Enhancers Skeletal Muscle Male skeletal muscle
41 chr1:10277000-10322000 Weak transcription Spleen Spleen
42 chr1:10277200-10278400 Enhancers Ovary ovary
43 chr1:10277400-10278400 Enhancers Fetal Brain Female brain
44 chr1:10277400-10278600 Enhancers Duodenum Mucosa Duodenum
45 chr1:10277400-10278800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
46 chr1:10277600-10278400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:10277600-10278400 Enhancers Aorta Aorta
48 chr1:10277600-10278400 Enhancers Esophagus oesophagus
49 chr1:10277600-10278400 Enhancers Pancreas Pancrea
50 chr1:10277600-10278400 Enhancers Stomach Mucosa stomach

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Last update: Aug 31, 2015