Variant report

Variant	rs7529458
Chromosome Location	chr1:10121131-10121132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11121507	1.00[MEX][hapmap]
rs1220390	1.00[MEX][hapmap]
rs3003379	1.00[AMR][1000 genomes]
rs3013786	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3013787	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3125087	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3125088	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3125089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35922640	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4011519	1.00[AMR][1000 genomes]
rs58064995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58762986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59661672	1.00[AMR][1000 genomes]
rs59843720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61775871	1.00[AMR][1000 genomes]
rs61775875	1.00[AMR][1000 genomes]
rs61775876	1.00[AMR][1000 genomes]
rs61775877	1.00[AMR][1000 genomes]
rs61775888	1.00[AMR][1000 genomes]
rs61775891	1.00[AMR][1000 genomes]
rs61775893	1.00[AMR][1000 genomes]
rs61775919	1.00[AMR][1000 genomes]
rs6661175	1.00[AMR][1000 genomes]
rs6672648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7524177	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7551816	1.00[AMR][1000 genomes]
rs9661136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012469	chr1:9925714-10147796	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10095000-10127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:10095000-10147600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:10095200-10134400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:10098800-10131200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:10106400-10134000	Weak transcription	Colonic Mucosa	Colon
6	chr1:10106800-10128400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:10106800-10134200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:10106800-10155400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:10107000-10125200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:10107000-10125200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:10107000-10125400	Weak transcription	Small Intestine	intestine
12	chr1:10107000-10140600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:10107200-10124000	Weak transcription	Fetal Brain Female	brain
14	chr1:10107200-10125200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:10107200-10125200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:10107400-10124000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:10107400-10124200	Strong transcription	Fetal Intestine Small	intestine
18	chr1:10107400-10125200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:10107400-10125400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:10107400-10135200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:10107400-10165400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:10107600-10125400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr1:10109000-10126400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:10109400-10158400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr1:10111400-10125200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:10111400-10127000	Weak transcription	Fetal Lung	lung
27	chr1:10113000-10124000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr1:10113000-10132000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr1:10114800-10125200	Weak transcription	Brain Germinal Matrix	brain
30	chr1:10116200-10124200	Weak transcription	HUVEC	blood vessel
31	chr1:10116600-10145000	Weak transcription	Stomach Mucosa	stomach
32	chr1:10117600-10121800	Enhancers	Placenta	Placenta
33	chr1:10117600-10122000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:10118000-10125600	Weak transcription	HSMM	muscle
35	chr1:10118200-10121800	Strong transcription	Fetal Thymus	thymus
36	chr1:10118200-10123600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:10118200-10123800	Strong transcription	Fetal Stomach	stomach
38	chr1:10118200-10124000	Weak transcription	K562	blood
39	chr1:10118200-10124400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:10118200-10125200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:10118200-10125200	Weak transcription	Osteobl	bone
42	chr1:10118200-10163000	Weak transcription	Aorta	Aorta
43	chr1:10118400-10124000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:10118400-10125200	Weak transcription	Fetal Heart	heart
45	chr1:10118400-10127000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr1:10118600-10125200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:10118600-10126200	Weak transcription	HSMMtube	muscle
48	chr1:10118800-10123200	Weak transcription	HMEC	breast
49	chr1:10118800-10124000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:10118800-10124400	Weak transcription	Colon Smooth Muscle	Colon

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