The 2.0 version of rSNPBase

Variant report

Variant rs61775875
Chromosome Location chr1:10279911-10279912
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10272600-10284000 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr1:10272600-10284000 Weak transcription Fetal Intestine Small intestine
3 chr1:10272600-10368200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:10272800-10284000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:10272800-10284400 Weak transcription Gastric stomach
6 chr1:10272800-10290000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:10272800-10296600 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:10274000-10282400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:10274000-10285200 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr1:10274200-10284600 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:10274600-10281200 Weak transcription Fetal Muscle Trunk muscle
12 chr1:10276600-10281800 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr1:10276800-10280000 Enhancers Brain Substantia Nigra brain
14 chr1:10276800-10311800 Weak transcription Hela-S3 cervix
15 chr1:10277000-10322000 Weak transcription Spleen Spleen
16 chr1:10278200-10285000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr1:10278200-10285200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr1:10278400-10280600 Weak transcription Ovary ovary
19 chr1:10278400-10280600 Weak transcription Right Ventricle heart
20 chr1:10278400-10280800 Weak transcription Lung lung
21 chr1:10278400-10281200 Enhancers Brain Hippocampus Middle brain
22 chr1:10278400-10281600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:10278400-10282400 Weak transcription Fetal Brain Female brain
24 chr1:10278400-10283800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr1:10278400-10284400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:10278400-10285000 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:10278400-10285000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:10278400-10285000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:10278400-10285000 Weak transcription Aorta Aorta
30 chr1:10278400-10285000 Weak transcription Fetal Kidney kidney
31 chr1:10278400-10285000 Weak transcription HSMM muscle
32 chr1:10278400-10285000 Weak transcription NH-A brain
33 chr1:10278400-10285200 Weak transcription Pancreas Pancrea
34 chr1:10278400-10291000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:10278400-10295200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:10278400-10302000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:10278600-10280200 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr1:10278600-10282200 Weak transcription Psoas Muscle Psoas
39 chr1:10278600-10282600 Weak transcription A549 lung
40 chr1:10278600-10283800 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr1:10278600-10284400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:10278600-10284600 Weak transcription Fetal Stomach stomach
43 chr1:10278600-10285000 Weak transcription Fetal Heart heart
44 chr1:10278600-10294800 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr1:10278800-10280000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:10278800-10280000 Weak transcription HepG2 liver
47 chr1:10278800-10280600 Weak transcription Left Ventricle heart
48 chr1:10278800-10280600 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:10278800-10282200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr1:10278800-10282200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015