Variant report

Variant	rs61785887
Chromosome Location	chr1:98456643-98456644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1211661	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1628294	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1702293	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2154402	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2391903	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2802530	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2802531	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2802532	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61785883	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61786696	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61786697	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61787828	0.92[AMR][1000 genomes]
rs61787829	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61787830	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61789075	0.92[AMR][1000 genomes]
rs9324380	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv871625	chr1:98165091-98564736	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv871077	chr1:98274132-98541677	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1009621	chr1:98435638-98599284	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv871230	chr1:98436232-98564736	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98438000-98460200	Weak transcription	HSMM	muscle
2	chr1:98440200-98462000	Weak transcription	NHDF-Ad	bronchial
3	chr1:98452800-98462000	Weak transcription	HUVEC	blood vessel
4	chr1:98455200-98470600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:98455600-98463600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:98455600-98463600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:98455800-98462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:98456000-98462400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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