Variant report

Variant	rs61785883
Chromosome Location	chr1:98449380-98449381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:98447575..98449660-chr1:98450318..98452554,2	MCF-7	breast:

Extended variants
information (count: 225 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10747490	0.82[ASN][1000 genomes]
rs10747491	0.82[ASN][1000 genomes]
rs10747492	0.82[ASN][1000 genomes]
rs10747495	0.90[ASN][1000 genomes]
rs10747496	0.90[ASN][1000 genomes]
rs10783082	0.90[ASN][1000 genomes]
rs10875111	0.82[ASN][1000 genomes]
rs10875112	0.82[ASN][1000 genomes]
rs10875113	0.82[ASN][1000 genomes]
rs10875120	0.82[ASN][1000 genomes]
rs10875121	1.00[ASN][1000 genomes]
rs10875125	0.90[ASN][1000 genomes]
rs11165920	0.82[ASN][1000 genomes]
rs11165921	0.82[ASN][1000 genomes]
rs11165934	0.94[ASN][1000 genomes]
rs11165935	1.00[ASN][1000 genomes]
rs11165937	1.00[ASN][1000 genomes]
rs11165938	0.94[ASN][1000 genomes]
rs11165939	0.94[ASN][1000 genomes]
rs11165940	0.94[ASN][1000 genomes]
rs1198571	0.90[ASN][1000 genomes]
rs1198572	0.90[ASN][1000 genomes]
rs1198573	0.90[ASN][1000 genomes]
rs1198574	0.90[ASN][1000 genomes]
rs1198575	0.84[ASN][1000 genomes]
rs1198576	0.84[ASN][1000 genomes]
rs1198577	0.84[ASN][1000 genomes]
rs1198578	0.84[ASN][1000 genomes]
rs1198579	0.84[ASN][1000 genomes]
rs1198580	0.84[ASN][1000 genomes]
rs1198581	0.84[ASN][1000 genomes]
rs1198582	0.84[ASN][1000 genomes]
rs1198583	0.84[ASN][1000 genomes]
rs1198588	0.84[ASN][1000 genomes]
rs1198589	0.84[ASN][1000 genomes]
rs1198590	0.84[ASN][1000 genomes]
rs1198591	0.84[ASN][1000 genomes]
rs1198592	0.84[ASN][1000 genomes]
rs1198593	0.84[ASN][1000 genomes]
rs1198594	0.84[ASN][1000 genomes]
rs1198596	0.84[ASN][1000 genomes]
rs1198598	0.84[ASN][1000 genomes]
rs1198600	0.84[ASN][1000 genomes]
rs12062845	0.82[ASN][1000 genomes]
rs12067567	0.94[ASN][1000 genomes]
rs12067700	0.94[ASN][1000 genomes]
rs12068763	0.94[ASN][1000 genomes]
rs12069474	0.94[ASN][1000 genomes]
rs12071067	0.94[ASN][1000 genomes]
rs12072739	0.88[ASN][1000 genomes]
rs12073487	0.88[ASN][1000 genomes]
rs12077962	0.88[ASN][1000 genomes]
rs12089031	0.88[ASN][1000 genomes]
rs1211661	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12406713	0.82[ASN][1000 genomes]
rs1622611	0.84[ASN][1000 genomes]
rs1628294	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1702291	0.84[ASN][1000 genomes]
rs1702292	0.84[ASN][1000 genomes]
rs1702293	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1702294	0.90[ASN][1000 genomes]
rs17379561	0.87[ASN][1000 genomes]
rs1782810	0.90[ASN][1000 genomes]
rs1782811	0.90[ASN][1000 genomes]
rs1782812	0.84[ASN][1000 genomes]
rs1782813	0.90[ASN][1000 genomes]
rs1782815	0.90[ASN][1000 genomes]
rs1782818	0.84[ASN][1000 genomes]
rs1801265	0.82[ASN][1000 genomes]
rs1892549	0.90[ASN][1000 genomes]
rs1892550	0.90[ASN][1000 genomes]
rs1892551	0.90[ASN][1000 genomes]
rs1892552	0.90[ASN][1000 genomes]
rs1938558	0.90[ASN][1000 genomes]
rs1938559	0.90[ASN][1000 genomes]
rs1938560	0.90[ASN][1000 genomes]
rs1938561	0.90[ASN][1000 genomes]
rs1938562	0.90[ASN][1000 genomes]
rs1938564	0.90[ASN][1000 genomes]
rs1938565	0.90[ASN][1000 genomes]
rs1938566	0.84[ASN][1000 genomes]
rs1938567	0.90[ASN][1000 genomes]
rs1938568	0.90[ASN][1000 genomes]
rs1938569	0.90[ASN][1000 genomes]
rs1938571	0.90[ASN][1000 genomes]
rs2022864	0.84[ASN][1000 genomes]
rs2022865	0.90[ASN][1000 genomes]
rs2154402	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2154403	0.90[ASN][1000 genomes]
rs2391873	0.90[ASN][1000 genomes]
rs2391902	0.90[ASN][1000 genomes]
rs2391903	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391904	0.90[ASN][1000 genomes]
rs2391905	0.87[ASN][1000 genomes]
rs2660298	0.84[ASN][1000 genomes]
rs2660299	0.84[ASN][1000 genomes]
rs2660300	0.84[ASN][1000 genomes]
rs2660301	0.84[ASN][1000 genomes]
rs2660304	0.90[ASN][1000 genomes]
rs2802525	0.84[ASN][1000 genomes]
rs2802529	0.84[ASN][1000 genomes]
rs2802530	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2802531	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2802532	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2802533	0.84[ASN][1000 genomes]
rs2802535	0.87[ASN][1000 genomes]
rs2802536	0.84[ASN][1000 genomes]
rs28582591	1.00[ASN][1000 genomes]
rs28641479	1.00[ASN][1000 genomes]
rs2893376	0.90[ASN][1000 genomes]
rs41285694	0.97[ASN][1000 genomes]
rs4245673	0.90[ASN][1000 genomes]
rs4246516	1.00[ASN][1000 genomes]
rs4274102	0.91[ASN][1000 genomes]
rs4292998	0.90[ASN][1000 genomes]
rs4294451	0.82[ASN][1000 genomes]
rs4322261	0.94[ASN][1000 genomes]
rs4372296	0.88[ASN][1000 genomes]
rs4378243	0.88[ASN][1000 genomes]
rs4379706	0.88[ASN][1000 genomes]
rs4394693	0.82[ASN][1000 genomes]
rs4411173	0.90[ASN][1000 genomes]
rs4421623	0.88[ASN][1000 genomes]
rs4423049	0.88[ASN][1000 genomes]
rs4456128	0.82[ASN][1000 genomes]
rs4477335	0.90[ASN][1000 genomes]
rs4478846	0.88[ASN][1000 genomes]
rs4480407	0.90[ASN][1000 genomes]
rs4495746	0.85[ASN][1000 genomes]
rs4506495	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4523551	0.82[ASN][1000 genomes]
rs4523552	0.82[ASN][1000 genomes]
rs45522136	0.94[ASN][1000 genomes]
rs4573558	0.90[ASN][1000 genomes]
rs4584446	0.90[ASN][1000 genomes]
rs4598523	0.88[ASN][1000 genomes]
rs4634961	0.90[ASN][1000 genomes]
rs4950117	0.90[ASN][1000 genomes]
rs4950118	0.90[ASN][1000 genomes]
rs4950119	0.90[ASN][1000 genomes]
rs4950120	0.90[ASN][1000 genomes]
rs4970719	0.88[ASN][1000 genomes]
rs4970720	0.82[ASN][1000 genomes]
rs4970721	0.82[ASN][1000 genomes]
rs4970722	0.82[ASN][1000 genomes]
rs4970723	0.82[ASN][1000 genomes]
rs4970725	0.82[ASN][1000 genomes]
rs5005705	0.90[ASN][1000 genomes]
rs56732321	0.94[ASN][1000 genomes]
rs57468345	0.94[ASN][1000 genomes]
rs61785881	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61785882	0.94[ASN][1000 genomes]
rs61785886	0.94[ASN][1000 genomes]
rs61785887	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61785888	0.90[ASN][1000 genomes]
rs61785889	1.00[AFR][1000 genomes]
rs61785940	1.00[AFR][1000 genomes]
rs61786606	1.00[AFR][1000 genomes]
rs61786610	1.00[AFR][1000 genomes]
rs61786696	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61786697	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61787781	1.00[AFR][1000 genomes]
rs61787782	0.88[ASN][1000 genomes]
rs61787783	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61787784	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61787785	0.87[ASN][1000 genomes]
rs61787819	0.82[ASN][1000 genomes]
rs61787820	0.82[ASN][1000 genomes]
rs61787824	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61787827	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61787828	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61787829	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61787830	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61789073	1.00[AFR][1000 genomes]
rs61789075	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789077	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61789078	1.00[ASN][1000 genomes]
rs61789079	1.00[ASN][1000 genomes]
rs61789082	1.00[ASN][1000 genomes]
rs6604093	0.82[ASN][1000 genomes]
rs6604098	0.88[ASN][1000 genomes]
rs6658412	0.88[ASN][1000 genomes]
rs6664489	0.94[ASN][1000 genomes]
rs6677116	0.82[ASN][1000 genomes]
rs6703588	0.94[ASN][1000 genomes]
rs72963738	1.00[ASN][1000 genomes]
rs7415086	0.82[ASN][1000 genomes]
rs7524038	0.82[ASN][1000 genomes]
rs7526108	0.88[ASN][1000 genomes]
rs9285628	1.00[ASN][1000 genomes]
rs9324374	0.82[ASN][1000 genomes]
rs9324378	0.94[ASN][1000 genomes]
rs9324379	1.00[ASN][1000 genomes]
rs9324380	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9324381	0.90[ASN][1000 genomes]
rs9324382	0.90[ASN][1000 genomes]
rs9324383	0.90[ASN][1000 genomes]
rs9324384	0.90[ASN][1000 genomes]
rs9324385	0.90[ASN][1000 genomes]
rs9324386	0.90[ASN][1000 genomes]
rs9324387	0.90[ASN][1000 genomes]
rs9324388	0.90[ASN][1000 genomes]
rs9324389	0.90[ASN][1000 genomes]
rs9440288	0.90[ASN][1000 genomes]
rs9440293	0.90[ASN][1000 genomes]
rs9440393	0.90[ASN][1000 genomes]
rs9658841	0.90[ASN][1000 genomes]
rs9659380	1.00[ASN][1000 genomes]
rs9659624	0.90[ASN][1000 genomes]
rs9659996	0.84[ASN][1000 genomes]
rs9661157	0.90[ASN][1000 genomes]
rs9661794	0.82[ASN][1000 genomes]
rs9662232	0.82[ASN][1000 genomes]
rs9724773	0.90[ASN][1000 genomes]
rs9725319	0.90[ASN][1000 genomes]
rs9727941	0.90[ASN][1000 genomes]
rs9729190	0.94[ASN][1000 genomes]
rs9729897	0.82[ASN][1000 genomes]
rs9887831	0.94[ASN][1000 genomes]
rs9887848	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv871625	chr1:98165091-98564736	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv871077	chr1:98274132-98541677	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1009621	chr1:98435638-98599284	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv871230	chr1:98436232-98564736	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98409600-98455000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:98438000-98460200	Weak transcription	HSMM	muscle
3	chr1:98440200-98462000	Weak transcription	NHDF-Ad	bronchial

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