Variant report

Variant	rs61785882
Chromosome Location	chr1:98448341-98448342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:98447575..98449660-chr1:98450318..98452554,2	MCF-7	breast:

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10747495	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10747496	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783082	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10875121	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10875125	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165934	0.88[ASN][1000 genomes]
rs11165935	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11165937	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11165938	0.88[ASN][1000 genomes]
rs11165939	0.88[ASN][1000 genomes]
rs11165940	0.88[ASN][1000 genomes]
rs1198571	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1198572	0.83[ASN][1000 genomes]
rs1198573	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1198574	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1198576	0.81[AMR][1000 genomes]
rs1198577	0.81[AMR][1000 genomes]
rs1198578	0.81[AMR][1000 genomes]
rs1198579	0.81[AMR][1000 genomes]
rs1198592	0.81[AMR][1000 genomes]
rs1198593	0.81[AMR][1000 genomes]
rs1198596	0.81[AMR][1000 genomes]
rs12067567	0.88[ASN][1000 genomes]
rs12067700	0.88[ASN][1000 genomes]
rs12068763	0.88[ASN][1000 genomes]
rs12069474	0.88[ASN][1000 genomes]
rs12071067	0.88[ASN][1000 genomes]
rs12072739	0.81[ASN][1000 genomes]
rs12073487	0.81[ASN][1000 genomes]
rs12077962	0.81[ASN][1000 genomes]
rs12089031	0.81[ASN][1000 genomes]
rs1628294	0.83[ASN][1000 genomes]
rs1702293	0.83[ASN][1000 genomes]
rs1702294	0.83[ASN][1000 genomes]
rs17379561	0.81[ASN][1000 genomes]
rs1782810	0.83[ASN][1000 genomes]
rs1782811	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1782813	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1782815	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1892549	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1892550	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1892551	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1892552	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938558	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938559	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938560	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938561	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938562	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938563	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1938564	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938565	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938566	0.85[EUR][1000 genomes]
rs1938567	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938568	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938569	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938571	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1938572	0.84[EUR][1000 genomes]
rs1938573	0.83[EUR][1000 genomes]
rs2022864	0.86[EUR][1000 genomes]
rs2022865	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2154402	0.83[ASN][1000 genomes]
rs2154403	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391873	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391902	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391903	0.83[ASN][1000 genomes]
rs2391904	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391905	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2660304	0.83[ASN][1000 genomes]
rs2802529	0.81[AMR][1000 genomes]
rs2802535	0.80[ASN][1000 genomes]
rs2802536	0.81[AMR][1000 genomes]
rs28582591	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28641479	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2893376	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41285694	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245673	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4246516	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4274102	0.85[ASN][1000 genomes]
rs4292998	0.83[ASN][1000 genomes]
rs4322261	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4372296	0.81[ASN][1000 genomes]
rs4378243	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4379706	0.81[ASN][1000 genomes]
rs4411173	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4421623	0.81[ASN][1000 genomes]
rs4423049	0.82[ASN][1000 genomes]
rs4447033	0.89[EUR][1000 genomes]
rs4477335	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4478846	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4480407	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4506495	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs45522136	0.87[ASN][1000 genomes]
rs4573558	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4584446	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4598523	0.82[ASN][1000 genomes]
rs4634961	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4950117	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4950118	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4950119	0.83[ASN][1000 genomes]
rs4950120	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4970719	0.81[ASN][1000 genomes]
rs5005705	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56732321	0.88[ASN][1000 genomes]
rs57468345	0.88[ASN][1000 genomes]
rs61785881	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61785883	0.94[ASN][1000 genomes]
rs61785886	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61785888	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61787782	0.81[ASN][1000 genomes]
rs61787783	0.81[ASN][1000 genomes]
rs61787784	0.81[ASN][1000 genomes]
rs61787785	0.81[ASN][1000 genomes]
rs61787829	0.81[ASN][1000 genomes]
rs61787830	0.81[ASN][1000 genomes]
rs61789075	0.94[ASN][1000 genomes]
rs61789077	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61789078	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61789079	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61789082	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6604098	0.82[ASN][1000 genomes]
rs6658412	0.81[ASN][1000 genomes]
rs6664489	0.88[ASN][1000 genomes]
rs6703588	0.88[ASN][1000 genomes]
rs72963738	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7526108	0.81[ASN][1000 genomes]
rs9285628	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9324378	0.88[ASN][1000 genomes]
rs9324379	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9324380	0.83[ASN][1000 genomes]
rs9324381	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324382	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324383	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324384	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324385	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324386	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324387	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324388	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324389	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9440288	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9440293	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9440393	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9658841	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9659380	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9659624	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9659996	0.89[EUR][1000 genomes]
rs9661157	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9724773	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9725319	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9727941	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9729190	0.88[ASN][1000 genomes]
rs9887831	0.88[ASN][1000 genomes]
rs9887848	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv871625	chr1:98165091-98564736	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv871077	chr1:98274132-98541677	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1009621	chr1:98435638-98599284	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv871230	chr1:98436232-98564736	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98409600-98455000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:98438000-98460200	Weak transcription	HSMM	muscle
3	chr1:98440200-98462000	Weak transcription	NHDF-Ad	bronchial

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