The 2.0 version of rSNPBase

Variant report

Variant rs61787827
Chromosome Location chr1:98385673-98385674
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:98382200-98385800 Active TSS Fetal Brain Female brain
2 chr1:98384000-98385800 Flanking Active TSS Primary T cells from cord blood blood
3 chr1:98384000-98387600 Active TSS Brain Substantia Nigra brain
4 chr1:98384000-98387600 Active TSS Rectal Mucosa Donor 29 rectum
5 chr1:98384200-98386800 Active TSS HMEC breast
6 chr1:98384200-98387400 Active TSS Right Atrium heart
7 chr1:98384200-98387400 Active TSS GM12878-XiMat blood
8 chr1:98384200-98387400 Active TSS NHLF lung
9 chr1:98384400-98387600 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:98384400-98387600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:98384600-98385800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr1:98384600-98385800 Flanking Active TSS NH-A brain
13 chr1:98384600-98386000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
14 chr1:98384600-98386200 Flanking Active TSS Primary hematopoietic stem cells blood
15 chr1:98384600-98387200 Active TSS Psoas Muscle Psoas
16 chr1:98384600-98387200 Active TSS HSMMtube muscle
17 chr1:98384600-98387400 Active TSS Rectal Smooth Muscle rectum
18 chr1:98384800-98386000 Active TSS Fetal Brain Male brain
19 chr1:98384800-98386200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
20 chr1:98384800-98387000 Active TSS Fetal Thymus thymus
21 chr1:98384800-98387200 Active TSS Aorta Aorta
22 chr1:98384800-98387200 Active TSS Colon Smooth Muscle Colon
23 chr1:98384800-98387200 Active TSS Left Ventricle heart
24 chr1:98384800-98387200 Active TSS Skeletal Muscle Male skeletal muscle
25 chr1:98384800-98387400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr1:98384800-98387400 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:98384800-98387400 Active TSS Brain Hippocampus Middle brain
28 chr1:98384800-98387400 Active TSS Duodenum Smooth Muscle Duodenum
29 chr1:98384800-98387400 Active TSS Rectal Mucosa Donor 31 rectum
30 chr1:98384800-98387600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:98384800-98387600 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:98384800-98387600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:98384800-98387600 Active TSS Stomach Smooth Muscle stomach
34 chr1:98385000-98385800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
35 chr1:98385000-98387200 Active TSS Primary T cells fromperipheralblood blood
36 chr1:98385000-98387200 Active TSS Primary T helper naive cells from peripheral blood blood
37 chr1:98385000-98387200 Active TSS Primary T regulatory cells fromperipheralblood blood
38 chr1:98385000-98387200 Active TSS Primary Natural Killer cells fromperipheralblood blood
39 chr1:98385000-98387200 Active TSS Primary T killer memory cells from peripheral blood blood
40 chr1:98385000-98387200 Active TSS Brain Angular Gyrus brain
41 chr1:98385000-98387200 Active TSS Brain Cingulate Gyrus brain
42 chr1:98385000-98387200 Active TSS Skeletal Muscle Female skeletal muscle
43 chr1:98385000-98387400 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:98385000-98387400 Active TSS Breast Myoepithelial Primary Cells Breast
45 chr1:98385000-98387400 Active TSS Muscle Satellite Cultured Cells --
46 chr1:98385000-98387400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
47 chr1:98385000-98387400 Active TSS Brain Anterior Caudate brain
48 chr1:98385000-98387400 Active TSS Brain Inferior Temporal Lobe brain
49 chr1:98385000-98387400 Active TSS Brain Dorsolateral Prefrontal Cortex brain
50 chr1:98385000-98387400 Active TSS Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015