Variant report

Variant	rs61790373
Chromosome Location	chr4:19929649-19929650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs61788997	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61789054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790380	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61790423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790436	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61790437	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61790447	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61791690	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61793023	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv878735	chr4:19810878-19933069	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1003707	chr4:19898883-19963213	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19929200-19930000	Enhancers	Osteobl	bone
2	chr4:19929200-19930200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links