Variant report

Variant	rs61791690
Chromosome Location	chr4:19986698-19986699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61788997	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61789054	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61790373	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61790379	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61790380	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61790423	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61790424	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61790425	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61790436	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61790437	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61790447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005430	chr4:19932874-20013705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19984200-19989000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:19984400-19989000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:19985000-19989000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:19985400-19989200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:19985600-19989200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:19985800-19989000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:19985800-19989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:19985800-19989000	Weak transcription	HUVEC	blood vessel
9	chr4:19985800-19989000	Weak transcription	NH-A	brain
10	chr4:19985800-19989000	Weak transcription	NHDF-Ad	bronchial
11	chr4:19985800-19989400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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