Variant report

Variant	rs61790379
Chromosome Location	chr4:19948895-19948896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs61788997	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61789054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790380	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61790423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61790436	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61790437	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61790447	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61791690	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61793023	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1003707	chr4:19898883-19963213	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
5	nsv1005430	chr4:19932874-20013705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19946400-19949800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:19946600-19949000	Enhancers	HUVEC	blood vessel
3	chr4:19946600-19949800	Enhancers	NHLF	lung
4	chr4:19946800-19949600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:19946800-19949600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:19947400-19949000	Enhancers	Dnd41	blood
7	chr4:19947600-19950000	Enhancers	NHDF-Ad	bronchial
8	chr4:19947800-19949600	Enhancers	NH-A	brain
9	chr4:19947800-19950000	Enhancers	Osteobl	bone
10	chr4:19948200-19949000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:19948400-19949000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:19948400-19950000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:19948600-19949800	Weak transcription	NHEK	skin
14	chr4:19948800-19949000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:19948800-19949600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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