Variant report

Variant	rs61795190
Chromosome Location	chr3:158965618-158965619
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11914905	0.89[EUR][1000 genomes]
rs11922548	0.89[EUR][1000 genomes]
rs11922600	0.89[EUR][1000 genomes]
rs16830241	0.89[EUR][1000 genomes]
rs58015192	0.89[EUR][1000 genomes]
rs60532575	0.89[EUR][1000 genomes]
rs61793163	0.89[EUR][1000 genomes]
rs61793164	0.89[EUR][1000 genomes]
rs61795161	1.00[AFR][1000 genomes]
rs61795162	1.00[AFR][1000 genomes]
rs61795165	1.00[AFR][1000 genomes]
rs61795167	1.00[AFR][1000 genomes]
rs61795169	1.00[AFR][1000 genomes]
rs61795189	1.00[AFR][1000 genomes]
rs61795191	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61795192	1.00[AFR][1000 genomes]
rs61795193	1.00[AFR][1000 genomes]
rs61795195	1.00[AFR][1000 genomes]
rs61795196	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61795203	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61795204	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61795205	1.00[AFR][1000 genomes]
rs61795245	0.89[EUR][1000 genomes]
rs61795248	0.89[EUR][1000 genomes]
rs61795249	0.89[EUR][1000 genomes]
rs61795255	0.89[EUR][1000 genomes]
rs61795446	0.89[EUR][1000 genomes]
rs61795447	0.89[EUR][1000 genomes]
rs61796065	0.89[EUR][1000 genomes]
rs61796066	0.89[EUR][1000 genomes]
rs61796067	0.89[EUR][1000 genomes]
rs61796069	0.89[EUR][1000 genomes]
rs61796070	0.89[EUR][1000 genomes]
rs61796097	0.89[EUR][1000 genomes]
rs6761991	0.89[EUR][1000 genomes]
rs7629027	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158955200-158968800	Weak transcription	NH-A	brain
2	chr3:158957400-158969800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:158964600-158968600	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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